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(-) Description

Title :  SHEWANELLA DENITRIFICANS NITROUS OXIDE REDUCTASE, REDUCED APO FORM
 
Authors :  L. K. Schneider, O. Einsle
Date :  15 Feb 16  (Deposition) - 02 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nitrogen Cycle Nitrous Oxide Reductase Beta Propeller Fold Apoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. K. Schneider, O. Einsle
Role Of Calcium In Secondary Structure Stabilization During Maturation Of Nitrous Oxide Reductase.
Biochemistry V. 55 1433 2016
PubMed-ID: 26885878  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01278

(-) Compounds

Molecule 1 - NITROUS-OXIDE REDUCTASE
    Chains: A, B
    EC Number: 1.7.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: NOSZ, SDEN_2219
    Organism Scientific: SHEWANELLA DENITRIFICANS (STRAIN OS217 / ATCC BAA-1090 / DSM 15013)
    Organism Taxid: 318161
    Synonym: N(2)OR,N2O REDUCTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I5J)

(-) Sites  (0, 0)

(no "Site" information available for 5I5J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I5J)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ile A:83 -Pro A:84
2Val A:181 -Pro A:182
3His A:419 -Tyr A:420
4Ile B:83 -Pro B:84
5Val B:181 -Pro B:182
6His B:419 -Tyr B:420

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I5J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I5J)

(-) Exons   (0, 0)

(no "Exon" information available for 5I5J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:531
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee.hhh.eeeeeee...eeeeeee............hhhhhhhhhhhh......eeeeeeeee..eeeeeeeeeee....eeeeee....eeeeeee.....eeeeeee.......eeeeeee..eeeeeee....eeeeeeee..eeeeeee.....eeeeeee..eeeeeeehhhhhhhhhh............eee.......eeeeee......eee.....eeeee......eeeee..hhhhhhh...hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhh......eeeeee....eeeeee...........eeeeee...............eeeeeee......eeeeeeee......eeeee.hhh.........hhhhhhhhhhhhhh........eeeee..eeeeeeee.......eeee....eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i5j A  55 SAVVHPGELDEYYGFWSGGHSGEVRILGIPSMRELMRIPVFNIDSATGWGITNESKRIKGDSAHLMTGDSHHPHMSMTDGSYNGKYVFINDKANSRVARIRCDVMKTDKMITIPNVQAIHGLRVQKVPYTKYVICNGEFRSLFNVIDAEKMEVAFQVMVDGNLDNTDADYDGKYFFSTCYNRDHVVVFSLERCLAALKAGKFTNYNGNKVPVLDGRKGSDLTRYIPVPKSPHGINTAPDGKYFVANGKLSPTVSVVEIARLDDVFSGKIQPRDAIVAEPELGLGPLHTAFDNKGNAFTTLFLDSQIAKWNIQDAIKAYNGEKVNYLRQKLDVHYQPGHNHTSQGETRDTDGKWLVVLCKFSKDRFLPVGPLRPENDQLIDISGDEMKLVHDGPTFAEPHDCMIVHRSKVKPQKLWTRDDPMFADTVAMAKQDGVTLEMDNKVIRDGNKVRVYMTSIANFGMNEFKVKLGDEVTVVVTNLDQVEDVTHGFCMTNHGVQMEVAPQATASVTFIANKPGVQWYYCNWRGRMLVE 627
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       212       222       232       242       252||     276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      |547       557       567       577       587       597       607   ||  626 
                                                                                                                                                                    193|                                      253|                                                                                                                                                                                                                                                                                543|                                                               611|      
                                                                                                                                                                     212                                       268                                                                                                                                                                                                                                                                                 545                                                                621      


Chain B from PDB  Type:PROTEIN  Length:529
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee.hhh.eeeeeee...eeeeeee............hhhhhhhhhhhh......eeeeeeeee..eeeeeeeeeee....eeeeee....eeeeeee......eeeeee.......eeeeee...eeeeeee....eeeeeeee...eeeeee.....eeeeee..eeeeeehhhhhhhhhh............eee.......eeeee.......eee.....eeeee......eeeee..hhhhhhh...hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhh......eeeeee....eeeeee...........eeeeee...............eeeeeee......eeeeeeee......eeeee.hhh.........hhhhhhhhhhhhhh........eeeee..eeeeeeee.......eeee....eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i5j B  55 SAVVHPGELDEYYGFWSGGHSGEVRILGIPSMRELMRIPVFNIDSATGWGITNESKRIKGDSAHLMTGDSHHPHMSMTDGSYNGKYVFINDKANSRVARIRCDVMKTDKMITIPNVQAIHGLRVQKVPYTKYVICNGEFRSLFNVIDAEKMEVAFQVMVDGNLDNTDADYDGKYFFSTCYDHVVVFSLERCLAALKAGKFTNYNGNKVPVLDGRKGSDLTRYIPVPKSPHGINTAPDGKYFVANGKLSPTVSVVEIARLDDVFSGKIQPRDAIVAEPELGLGPLHTAFDNKGNAFTTLFLDSQIAKWNIQDAIKAYNGEKVNYLRQKLDVHYQPGHNHTSQGETRDTDGKWLVVLCKFSKDRFLPVGPLRPENDQLIDISGDEMKLVHDGPTFAEPHDCMIVHRSKVKPQKLWTRDDPMFADTVAMAKQDGVTLEMDNKVIRDGNKVRVYMTSIANFGMNEFKVKLGDEVTVVVTNLDQVEDVTHGFCMTNHGVQMEVAPQATASVTFIANKPGVQWYYCNWRGRMLVE 627
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       212       222       232       242       252|      278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538    || 549       559       569       579       589       599       609 ||      
                                                                                                                                                                    193|                                     252|                                                                                                                                                                                                                                                                               543|                                                               611|      
                                                                                                                                                                     212                                      269                                                                                                                                                                                                                                                                                545                                                                621
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I5J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I5J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I5J)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:419 - Tyr A:420   [ RasMol ]  
    His B:419 - Tyr B:420   [ RasMol ]  
    Ile A:83 - Pro A:84   [ RasMol ]  
    Ile B:83 - Pro B:84   [ RasMol ]  
    Val A:181 - Pro A:182   [ RasMol ]  
    Val B:181 - Pro B:182   [ RasMol ]  
 

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UniProtKB/TrEMBL
        Q12M27_SHEDO | Q12M27: 5i5i 5i5m

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