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(-) Description

Title :  SHEWANELLA DENITRIFICANS NITROUS OXIDE REDUCTASE, APP FORM
 
Authors :  L. K. Schneider, O. Einsle
Date :  15 Feb 16  (Deposition) - 02 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nitrogen Cycle Nitrous Oxide Reductase Beta Propeller Apoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. K. Schneider, O. Einsle
Role Of Calcium In Secondary Structure Stabilization During Maturation Of Nitrous Oxide Reductase.
Biochemistry V. 55 1433 2016
PubMed-ID: 26885878  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01278

(-) Compounds

Molecule 1 - NITROUS-OXIDE REDUCTASE
    Chains: A, B
    EC Number: 1.7.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: NOSZ, SDEN_2219
    Organism Scientific: SHEWANELLA DENITRIFICANS (STRAIN OS217 / ATCC BAA-1090 / DSM 15013)
    Organism Taxid: 318161
    Synonym: N(2)OR,N2O REDUCTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I5I)

(-) Sites  (0, 0)

(no "Site" information available for 5I5I)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:609 -A:613
2B:609 -B:613

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Ile A:83 -Pro A:84
2Val A:181 -Pro A:182
3Pro A:314 -Lys A:315
4His A:419 -Tyr A:420
5Ala A:543 -Pro A:544
6Ile B:83 -Pro B:84
7Thr B:132 -Asp B:133
8Val B:181 -Pro B:182
9Pro B:314 -Lys B:315
10His B:419 -Tyr B:420
11Ala B:543 -Pro B:544
12His B:617 -Met B:618

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I5I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I5I)

(-) Exons   (0, 0)

(no "Exon" information available for 5I5I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:539
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.hhh.eeeeeee....eeeeee............hhhhhhhhhhhh..........eeeee..eeeeeeeeeee....eeeeee....eeeeeee.....eeeeeee.......eeeeeee...eeeeeee....eeeeeeee..eeeeeee.....eeeeeeee...eeeeeeehhhhhhhhhhh...........eee.......eeeeee......eee.....eeeee......eeeee..hhhhhhh...hhhh.eee...........ee....eeeeee....eeeeeehhhhhhhhh......eeeeee....eeeeee...........eeeeee...............eeeeeee......eeeeeeee......eeeee.hhh.........hhhhhhhhhhhhhh........eeeee..eeeeeeeee..ee...eeeee...eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i5i A  58 VHPGELDEYYGFWSGGHSGEVRILGIPSMRELMRIPVFNIDSATGWGITNESKRIKGDSAHLMTGDSHHPHMSMTDGSYNGKYVFINDKANSRVARIRCDVMKTDKMITIPNVQAIHGLRVQKVPYTKYVICNGEFYRSLFNVIDAEKMEVAFQVMVDGNLDNTDADYDGKYFFSTCYNSERDHVVVFSLERCLAALKAGKFTNYNGNKVPVLDGRKGSDLTRYIPVPKSPHGINTAPDGKYFVANGKLSPTVSVVEIARLDDVFSGKIQPRDAIVAEPELGLGPLHTAFDNKGNAFTTLFLDSQIAKWNIQDAIKAYNGEKVNYLRQKLDVHYQPGHNHTSQGETRDTDGKWLVVLCKFSKDRFLPVGPLRPENDQLIDISGDEMKLVHDGPTFAEPHDCMIVHRSKVKPQKLWTRDDPMFADTVAMAKQDGVTLEMDNKVIRDGNKVRVYMTSIAPNFGMNEFKVKLGDEVTVVVTNLDQVEDVTHGFCMTNHGVQMEVAPQATASVTFIANKPGVQWYYCNWFCHMEMRGRMLVEA 628
                                    67        77        87        97       107       117       127       137       147       157       167       177       187     ||214       224       234       244       254|      276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606      |619         
                                                                                                                                                                 193|                                        254|                                                                                                                                                                                                                                                                                                                                                       613|           
                                                                                                                                                                  211                                         267                                                                                                                                                                                                                                                                                                                                                        617           


Chain B from PDB  Type:PROTEIN  Length:537
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee.hhhh.eeeeee...eeeeee.............hhhhhhhhhhhh..........eeee....eeeeeeeeee....eeeeee.....eeeeee.....eeeeeee.......eeeeeee..eeeeee....eeeeeee...eeeeeee.....eeeeeeee..eeeeeeehhhhhhhhhh............eee.......eeeeee......eee.....eeeee......eeeee..hhhhhhhh..hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhh......eeeeee....eeeeee...........eeeeee...............eeeeeee......eeeeeeee......eeeee.hhh............hhhhhhhhhhh........eeeee..eeeeeeeee..ee...eeeee...eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i5i B  57 VVHPGELDEYYGFWSGGHSGEVRILGIPSMRELMRIPVFNIDSATGWGITNESKRIKGDSAHLMTGDSHHPHMSMTDGSYNGKYVFINDKANSRVARIRCDVMKTDKMITIPNVQAIHGLRVQKVPYTKYVICNGEFSLFNVIDAEKMEVAFQVMVDGNLDNTDADYDGKYFFSTCYNSRDHVVVFSLERCLAALKAGKFTNYNGNKVPVLDGRKGSDLTRYIPVPKSPHGINTAPDGKYFVANGKLSPTVSVVEIARLDDVFSGKIQPRDAIVAEPELGLGPLHTAFDNKGNAFTTLFLDSQIAKWNIQDAIKAYNGEKVNYLRQKLDVHYQPGHNHTSQGETRDTDGKWLVVLCKFSKDRFLPVGPLRPENDQLIDISGDEMKLVHDGPTFAEPHDCMIVHRSKVKPQKLWTRDDPMFADTVAMAKQDGVTLEMDNKVIRDGNKVRVYMTSIAPNFGMNEFKVKLGDEVTVVVTNLDQVEDVTHGFCMTNHGVQMEVAPQATASVTFIANKPGVQWYYCNWFCHMEMRGRMLVEA 628
                                    66        76        86        96       106       116       126       136       146       156       166       176       186      |215       225       235       245       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608    || 621       
                                                                                                                                                                  193|                                      254|                                                                                                                                                                                                                                                                                                                                                      613|           
                                                                                                                                                                   213                                       268                                                                                                                                                                                                                                                                                                                                                       617
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I5I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I5I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I5I)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:543 - Pro A:544   [ RasMol ]  
    Ala B:543 - Pro B:544   [ RasMol ]  
    His A:419 - Tyr A:420   [ RasMol ]  
    His B:419 - Tyr B:420   [ RasMol ]  
    His B:617 - Met B:618   [ RasMol ]  
    Ile A:83 - Pro A:84   [ RasMol ]  
    Ile B:83 - Pro B:84   [ RasMol ]  
    Pro A:314 - Lys A:315   [ RasMol ]  
    Pro B:314 - Lys B:315   [ RasMol ]  
    Thr B:132 - Asp B:133   [ RasMol ]  
    Val A:181 - Pro A:182   [ RasMol ]  
    Val B:181 - Pro B:182   [ RasMol ]  
 

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        Q12M27_SHEDO | Q12M27: 5i5j 5i5m

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