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(-) Description

Title :  CRYSTAL STRUCTURE OF TPP1 K170DEL
 
Authors :  J. Nandakumar, E. Smith
Date :  09 Feb 16  (Deposition) - 09 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ob Fold, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Bisht, E. M. Smith, V. M. Tesmer, J. Nandakumar
Structural And Functional Consequences Of A Disease Mutatio In The Telomere Protein Tpp1.
Proc. Natl. Acad. Sci. Usa V. 113 13021 2016
PubMed-ID: 27807141  |  Reference-DOI: 10.1073/PNAS.1605685113

(-) Compounds

Molecule 1 - ADRENOCORTICAL DYSPLASIA PROTEIN HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-SMT3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: OB DOMAIN
    Gene: ACD, PIP1, PTOP, TINT1, TPP1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: POT1 AND TIN2-INTERACTING PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I2X)

(-) Sites  (0, 0)

(no "Site" information available for 5I2X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I2X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I2X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I2X)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5I2X)

(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..hhhhhhhh.......eeeeeeeeee...................eeeeee....eeeeeehhhhhhhh.............eeeeeeeeeeeee........eeeeeeeeeeeeeee.......hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5i2x A  90 SGRLVLRPWIRELILGSETPSSPRAGQLLEVLQDAEAAVAGPSHAPDTSDVGATLLVSDGTHSVRCLVTREALDTSDWEEEFGFRGTEGRLLLLQDCGVHVQVAEGGAPAEFYLQVDRFSLLPTEQPRLRVPGCNQDLDVQKKLYDCLEE 239
                                    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..hhhhhhhh.......eeeeeeeeee.....eeeeee....eeeeeehhhhhhh...........eeeee..eeeeee........eeeeee..eeeeeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5i2x B  90 SGRLVLRPWIRELILGSETPSSPRAGQLLEVLQDAEVGATLLVSDGTHSVRCLVTREALDTSDWFGFRGTEGRLLLLQDCGVHVQVAEGGAPAEFYLQVDRFSLLPTEQPRLRVPGCNQDLDVQKKLYDCLE 238
                                    99       109       119     ||143       153       163   ||  176       186       196       206       216       226       236  
                                                             125|                        167|                                                                   
                                                              140                         171
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I2X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I2X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I2X)

(-) Gene Ontology  (29, 29)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACD_HUMAN | Q96AP0: 2i46 5h65 5i2y 5un7

(-) Related Entries Specified in the PDB File

2i46 2I46 CONTAINS THE CRYSTAL STRUCTURE OF THE WT PROTEIN.
5i2y