5I1O - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   VILLIN HEADPIECE SUBDOMAIN WITH A GLN26 TO ACPC SUBSTITUTION

Authors :   D. F. Kreitler, D. E. Mortenson, S. H. Gellman, K. T. Forest

Date :   05 Feb 16 (Deposition) - 25 May 16 (Release) - 08 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.35

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H

Keywords :   Quasiracemic, Foldamer, Alpha/Beta Peptide, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. F. Kreitler, D. E. Mortenson, K. T. Forest, S. H. Gellman
Effects Of Single Alpha-To-Beta Residue Replacements On Structure And Stability In A Small Protein: Insights From Quasiracemic Crystallization.
J. Am. Chem. Soc. V. 138 6498 2016
PubMed-ID: 27171550 | Reference-DOI: 10.1021/JACS.6B01454

Molecule 1 - VILLIN-1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	SYNTHETIC PEPTIDE, FMOC SOLID PHASE SYNTHESIS
	Synthetic	:	YES

Molecule 2 - D-VILLIN HEADPIECE SUBDOMAIN
	Chains	:	E, F, G, H
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Other Details	:	SYNTHETIC PEPTIDE, FMOC SOLID PHASE SYNTHESIS
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (17, 134)

No.	Name	Count	Type	Full Name
1	DAL	12	Mod. Amino Acid	D-ALANINE
2	DAR	4	Mod. Amino Acid	D-ARGININE
3	DAS	8	Mod. Amino Acid	D-ASPARTIC ACID
4	DGL	8	Mod. Amino Acid	D-GLUTAMIC ACID
5	DGN	8	Mod. Amino Acid	D-GLUTAMINE
6	DHI	4	Mod. Amino Acid	D-HISTIDINE
7	DLE	20	Mod. Amino Acid	D-LEUCINE
8	DLY	20	Mod. Amino Acid	D-LYSINE
9	DPN	14	Mod. Amino Acid	D-PHENYLALANINE
10	DPR	4	Mod. Amino Acid	D-PROLINE
11	DSG	4	Mod. Amino Acid	D-ASPARAGINE
12	DSN	8	Mod. Amino Acid	D-SERINE
13	DTH	4	Mod. Amino Acid	D-THREONINE
14	DTR	4	Mod. Amino Acid	D-TRYPTOPHAN
15	DVA	4	Mod. Amino Acid	D-VALINE
16	MED	4	Mod. Amino Acid	D-METHIONINE
17	XCP	4	Mod. Amino Acid	(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID

(no "Site" information available for 5I1O)

(no "SS Bond" information available for 5I1O)

(no "Cis Peptide Bond" information available for 5I1O)

(no "SAP(SNP)/Variant" information available for 5I1O)

(no "PROSITE Motif" information available for 5I1O)

(no "Exon" information available for 5I1O)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1o A  1 LSDEDFKAVFGMTRSAFANLPLWKQxHLKKEKGLF 35
                                    10        20     |  30     
                                                    26-XCP

Chain B from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1o B  1 LSDEDFKAVFGMTRSAFANLPLWKQxHLKKEKGLF 35
                                    10        20     |  30     
                                                    26-XCP

Chain C from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1o C  1 LSDEDFKAVFGMTRSAFANLPLWKQxHLKKEKGLF 35
                                    10        20     |  30     
                                                    26-XCP

Chain D from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1o D  1 LSDEDFKAVFGMTRSAFANLPLWKQxHLKKEKGLF 35
                                    10        20     |  30     
                                                    26-XCP

Chain E from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1o E  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxx 35
                            ||||||||10 |||||||20||||||||30|| ||
                            1-DLE|||10-DPN||||20-DLE|||29-DLY||
                             2-DSN||| 12-MED|||21-DPR|||30-DLY|
                              3-DAS||  13-DTH|| 22-DLE|| 31-DGL
                               4-DGL|   14-DAR|  23-DTR|  32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN    35-DPN
                                  7-DLY    17-DPN   26-DGN     
                                   8-DAL    18-DAL   27-DHI    
                                    9-DVA    19-DSG   28-DLE

Chain F from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  5i1o F  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGx 34
                            ||||||||10 |||||||20||||||||30|| |
                            ||||||||9-DVA||||19-DSG|||28-DLE |
                            1-DLE|||10-DPN||||20-DLE|||29-DLY|
                             2-DSN||  12-MED|| 21-DPR|| 30-DLY
                              3-DAS|   13-DTH|  22-DLE|  31-DGL
                               4-DGL    14-DAR   23-DTR   32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN     
                                  7-DLY    17-DPN   26-DGN    
                                   8-DAL    18-DAL   27-DHI

Chain G from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  5i1o G  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGx 34
                            ||||||||10 |||||||20||||||||30|| |
                            ||||||||9-DVA||||19-DSG|||28-DLE |
                            1-DLE|||10-DPN||||20-DLE|||29-DLY|
                             2-DSN||  12-MED|| 21-DPR|| 30-DLY
                              3-DAS|   13-DTH|  22-DLE|  31-DGL
                               4-DGL    14-DAR   23-DTR   32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN     
                                  7-DLY    17-DPN   26-DGN    
                                   8-DAL    18-DAL   27-DHI

Chain H from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1o H  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxx 35
                            ||||||||10 |||||||20||||||||30|| ||
                            ||||||||9-DVA||||19-DSG|||28-DLE ||
                            1-DLE|||10-DPN||||20-DLE|||29-DLY||
                             2-DSN||  12-MED|| 21-DPR|| 30-DLY|
                              3-DAS|   13-DTH|  22-DLE|  31-DGL
                               4-DGL    14-DAR   23-DTR   32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN    35-DPN
                                  7-DLY    17-DPN   26-DGN     
                                   8-DAL    18-DAL   27-DHI

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5I1O)

(no "CATH Domain" information available for 5I1O)

(no "Pfam Domain" information available for 5I1O)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		DAL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DAR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DAS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DGL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DGN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DHI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DLE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DLY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DPN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DPR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DSG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DSN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DTH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DTR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DVA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MED	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		XCP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 5i1o)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5i1o)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	5i1o
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	VILI_CHICK \| P02640
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	VILI_CHICK \| P02640
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (17, 134)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (36, 36)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File