5I1P - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   VILLIN HEADPIECE SUBDOMAIN WITH A LYS30 TO BETA-3-HOMOLYSINE SUBSTITUTION

Authors :   D. F. Kreitler, D. E. Mortenson, S. H. Gellman, K. T. Forest

Date :   05 Feb 16 (Deposition) - 25 May 16 (Release) - 13 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H

Keywords :   Quasiracemic, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. F. Kreitler, D. E. Mortenson, K. T. Forest, S. H. Gellman
Effects Of Single Alpha-To-Beta Residue Replacements On Structure And Stability In A Small Protein: Insights From Quasiracemic Crystallization.
J. Am. Chem. Soc. V. 138 6498 2016
PubMed-ID: 27171550 | Reference-DOI: 10.1021/JACS.6B01454

Molecule 1 - VILLIN-1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	SYNTHETIC PEPTIDE, FMOC SOLID PHASE SYNTHESIS
	Synthetic	:	YES

Molecule 2 - D-VILLIN HEADPIECE SUBDOMAIN
	Chains	:	E, F, G, H
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Other Details	:	SYNTHETIC PEPTIDE, FMOC SOLID PHASE SYNTHESIS
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (18, 138)

No.	Name	Count	Type	Full Name
1	B3K	4	Mod. Amino Acid	(3S)-3,7-DIAMINOHEPTANOIC ACID
2	DAL	12	Mod. Amino Acid	D-ALANINE
3	DAR	4	Mod. Amino Acid	D-ARGININE
4	DAS	8	Mod. Amino Acid	D-ASPARTIC ACID
5	DGL	8	Mod. Amino Acid	D-GLUTAMIC ACID
6	DGN	8	Mod. Amino Acid	D-GLUTAMINE
7	DHI	4	Mod. Amino Acid	D-HISTIDINE
8	DLE	19	Mod. Amino Acid	D-LEUCINE
9	DLY	20	Mod. Amino Acid	D-LYSINE
10	DPN	16	Mod. Amino Acid	D-PHENYLALANINE
11	DPR	4	Mod. Amino Acid	D-PROLINE
12	DSG	4	Mod. Amino Acid	D-ASPARAGINE
13	DSN	8	Mod. Amino Acid	D-SERINE
14	DTH	4	Mod. Amino Acid	D-THREONINE
15	DTR	4	Mod. Amino Acid	D-TRYPTOPHAN
16	DVA	4	Mod. Amino Acid	D-VALINE
17	EOH	3	Ligand/Ion	ETHANOL
18	MED	4	Mod. Amino Acid	D-METHIONINE

(no "Site" information available for 5I1P)

(no "SS Bond" information available for 5I1P)

Asymmetric/Biological Unit

No.	Residues
1	Dle H:34	-	Dpn H:35

(no "SAP(SNP)/Variant" information available for 5I1P)

(no "PROSITE Motif" information available for 5I1P)

(no "Exon" information available for 5I1P)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  5i1p A  1 LSDEDFKAVFGMTRSAFANLPLWKQQHLKkEKGL 34
                                    10        20        30    
                                                        30-B3K

Chain B from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1p B  1 LSDEDFKAVFGMTRSAFANLPLWKQQHLKkEKGLF 35
                                    10        20        30     
                                                        30-B3K

Chain C from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  5i1p C  1 LSDEDFKAVFGMTRSAFANLPLWKQQHLKkEKGL 34
                                    10        20        30    
                                                        30-B3K

Chain D from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1p D  1 LSDEDFKAVFGMTRSAFANLPLWKQQHLKkEKGLF 35
                                    10        20        30     
                                                        30-B3K

Chain E from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1p E  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxx 35
                            ||||||||10 |||||||20||||||||30|| ||
                            1-DLE|||10-DPN||||20-DLE|||29-DLY||
                             2-DSN||| 12-MED|||21-DPR|||30-DLY|
                              3-DAS||  13-DTH|| 22-DLE|| 31-DGL
                               4-DGL|   14-DAR|  23-DTR|  32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN    35-DPN
                                  7-DLY    17-DPN   26-DGN     
                                   8-DAL    18-DAL   27-DHI    
                                    9-DVA    19-DSG   28-DLE

Chain F from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1p F  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxx 35
                            ||||||||10 |||||||20||||||||30|| ||
                            ||||||||9-DVA||||19-DSG|||28-DLE ||
                            1-DLE|||10-DPN||||20-DLE|||29-DLY||
                             2-DSN||  12-MED|| 21-DPR|| 30-DLY|
                              3-DAS|   13-DTH|  22-DLE|  31-DGL
                               4-DGL    14-DAR   23-DTR   32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN    35-DPN
                                  7-DLY    17-DPN   26-DGN     
                                   8-DAL    18-DAL   27-DHI

Chain G from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  5i1p G  1 xxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxx 35
                            ||||||||10 |||||||20||||||||30|| ||
                            ||||||||9-DVA||||19-DSG|||28-DLE ||
                            1-DLE|||10-DPN||||20-DLE|||29-DLY||
                             2-DSN||  12-MED|| 21-DPR|| 30-DLY|
                              3-DAS|   13-DTH|  22-DLE|  31-DGL
                               4-DGL    14-DAR   23-DTR   32-DLY
                                5-DAS    15-DSN   24-DLY    34-DLE
                                 6-DPN    16-DAL   25-DGN    35-DPN
                                  7-DLY    17-DPN   26-DGN     
                                   8-DAL    18-DAL   27-DHI

Chain H from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  5i1p H  2 xxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxx 35
                            ||||||||11||||||||21||||||||31| ||
                            |||||||10-DPN||||20-DLE|||29-DLY||
                            2-DSN||| 12-MED|||21-DPR|||30-DLY|
                             3-DAS||  13-DTH|| 22-DLE|| 31-DGL
                              4-DGL|   14-DAR|  23-DTR|  32-DLY
                               5-DAS    15-DSN   24-DLY    34-DLE
                                6-DPN    16-DAL   25-DGN    35-DPN
                                 7-DLY    17-DPN   26-DGN     
                                  8-DAL    18-DAL   27-DHI    
                                   9-DVA    19-DSG   28-DLE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5I1P)

(no "CATH Domain" information available for 5I1P)

(no "Pfam Domain" information available for 5I1P)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Sites
(no "Sites" information available for 5i1p)

	Cis Peptide Bonds
		Dle H:34 - Dpn H:35	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (18, 138)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (36, 36)

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