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(-) Description

Title :  CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM FRANCISELLA TULARENSIS COMPLEXED WITH FUMARIC ACID
 
Authors :  C. Chang, N. Maltseva, Y. Kim, S. Shatsman, W. F. Anderson, A. Joachimia For Structural Genomics Of Infectious Diseases (Csgid)
Date :  28 Jan 16  (Deposition) - 10 Feb 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, N. Maltseva, Y. Kim, S. Shatsman, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Adenylosuccinate Lyase From Francisell Tularensis Complexed With Fumaric Acid
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADENYLOSUCCINATE LYASE
    Chains: A, B, C, D
    EC Number: 4.3.2.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 562
    Gene: PURB, FTT_0015, BZ14_879
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS (STRAIN SCHU S4 / SCHU 4)
    Organism Taxid: 177416
    Strain: SCHU S4 / SCHU 4

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2FUM3Ligand/IonFUMARIC ACID
3K4Ligand/IonPOTASSIUM ION
4PO44Ligand/IonPHOSPHATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:96 , GLN A:179 , SER A:181 , GLY A:182 , THR A:211 , GLN A:212binding site for residue K A 501
02AC2SOFTWAREHIS A:67 , HIS A:89 , VAL A:92 , THR A:93 , SER A:94 , HOH A:646binding site for residue FUM A 502
03AC3SOFTWAREARG A:4 , TYR A:5 , ASN A:276 , HOH A:695 , SER D:306 , ARG D:310binding site for residue PO4 A 503
04AC4SOFTWAREGLU A:309 , HOH A:624 , HOH A:716binding site for residue EDO A 504
05AC5SOFTWAREGLU A:9 , LYS A:12 , ILE A:13 , ASN A:18 , HOH A:632binding site for residue EDO A 505
06AC6SOFTWARETHR B:93 , ASP B:96 , GLN B:179 , GLY B:182 , THR B:211 , GLN B:212binding site for residue K B 501
07AC7SOFTWAREHIS B:67 , THR B:93 , SER B:94 , GLN B:212 , HOH B:629 , HOH B:735 , SER C:262binding site for residue FUM B 502
08AC8SOFTWAREARG B:4 , TYR B:5 , ASN B:276 , HOH B:615 , HOH B:628 , HOH B:637 , SER C:306 , ARG C:310binding site for residue PO4 B 503
09AC9SOFTWARETHR C:93 , ASP C:96 , GLN C:179 , SER C:181 , GLY C:182 , THR C:211 , GLN C:212binding site for residue K C 501
10AD1SOFTWARETHR C:93 , SER C:94binding site for residue FUM C 502
11AD2SOFTWARESER B:306 , ARG B:310 , ARG C:4 , TYR C:5 , ASN C:276 , HOH C:651 , HOH C:653 , HOH C:654binding site for residue PO4 C 503
12AD3SOFTWARELYS C:19 , SER C:306 , GLU C:309 , HOH C:634binding site for residue EDO C 504
13AD4SOFTWAREGLN C:337 , ARG C:338 , ASP C:339 , ILE C:340 , HOH C:685binding site for residue EDO C 505
14AD5SOFTWAREASP D:96 , GLN D:179 , SER D:181 , GLY D:182 , THR D:211 , GLN D:212binding site for residue K D 501
15AD6SOFTWARESER A:306 , ARG A:310 , ARG D:4 , TYR D:5 , ASN D:276 , HOH D:605 , HOH D:623 , HOH D:638binding site for residue PO4 D 502
16AD7SOFTWARELYS D:19 , SER D:306 , GLU D:309binding site for residue EDO D 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HW2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro C:266 -His C:267

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HW2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HW2)

(-) Exons   (0, 0)

(no "Exon" information available for 5HW2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheehhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hw2 A   1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFKKNPISTENLTGMARMLRSHVSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVKARGENLY 438
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    || 272       282       292       302       312       322       332       342       352       362       372     ||389       399       409       419       429         
                                                                                                                                                                                                                                                                                        255|                                                                                                           378|                                                    
                                                                                                                                                                                                                                                                                         268                                                                                                            386                                                    


Chain B from PDB  Type:PROTEIN  Length:416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeehhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hw2 B   1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFPHKKNPISTENLTGMARMLRSHVSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVKAR 433
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    || 270       280       290       300       310       320       330       340       350       360       370       387       397       407       417       427      
                                                                                                                                                                                                                                                                                        255|                                                                                                             378|                                               
                                                                                                                                                                                                                                                                                         266                                                                                                              386                                               


Chain C from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee...............hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hw2 C   1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRVPKGTAAEIRARAQIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVGESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVK 431
                                    10        20        30      ||41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   ||  263       273       283       293       303       313       323       333       343       353       363       373    || 389       399       409       419       429  
                                                               37|                                                                                                                                                                                                                     255|                                                                                                                     378|                                              
                                                                39                                                                                                                                                                                                                      258                                                                                                                      385                                              


Chain D from PDB  Type:PROTEIN  Length:417
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...........hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hw2 D   1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGPHKKNPISTENLTGMARMLRSHVSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVK 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       267       277       287       297       307       317       327       337       347       357       367       377||     394       404       414       424       
                                                                                                                                                                                                                                                                                           258|                                                                                                             378|                                             
                                                                                                                                                                                                                                                                                            266                                                                                                              386
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HW2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HW2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HW2)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q5NIQ1_FRATT | Q5NIQ1: 4eei

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