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Title :   CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM FRANCISELLA TULARENSIS COMPLEXED WITH AMP AND SUCCINATE

Authors :   N. Maltseva, Y. Kim, S. Shatsman, W. F. Anderson, A. Joachimiak, Center Structural Genomics Of Infectious Diseases (Csgid)

Date :   28 Mar 12 (Deposition) - 18 Apr 12 (Release) - 18 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.92

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: B  (2x)

Keywords :   Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha Structure, Lyase, Amp Binding, Beta- Elimination, Cytosole (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Maltseva, Y. Kim, S. Shatsman, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Adenylosuccinate Lyase From Francisell Tularensis Complexed With Amp And Succinate
To Be Published
PubMed: search

Molecule 1 - ADENYLOSUCCINATE LYASE
	Chains	:	A, B
	EC Number	:	4.3.2.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG28
	Expression System Strain	:	BL21(DE3)-MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	FTT_0015, PURB
	Organism Scientific	:	FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4
	Organism Taxid	:	177416
	Strain	:	SCHU S4 / SCHU 4

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (2x)	:	A
Biological Unit 3 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 25)

No.	Name	Count	Type	Full Name
1	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	2	Ligand/Ion	CHLORIDE ION
3	EDO	17	Ligand/Ion	1,2-ETHANEDIOL
4	K	3	Ligand/Ion	POTASSIUM ION
5	SIN	1	Ligand/Ion	SUCCINIC ACID

Biological Unit 1 (3, 40)

No.	Name	Count	Type	Full Name
1	AMP	4	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	34	Ligand/Ion	1,2-ETHANEDIOL
4	K	-1	Ligand/Ion	POTASSIUM ION
5	SIN	2	Ligand/Ion	SUCCINIC ACID

Biological Unit 2 (2, 16)

No.	Name	Count	Type	Full Name
1	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
4	K	-1	Ligand/Ion	POTASSIUM ION
5	SIN	-1	Ligand/Ion	SUCCINIC ACID

Biological Unit 3 (3, 24)

No.	Name	Count	Type	Full Name
1	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	20	Ligand/Ion	1,2-ETHANEDIOL
4	K	-1	Ligand/Ion	POTASSIUM ION
5	SIN	2	Ligand/Ion	SUCCINIC ACID

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:62 , LYS A:66 , HIS A:67 , ASP A:68 , SER A:94 , SER A:95 , HIS A:141 , GLN A:212 , ARG A:301 , ILE A:303 , SER A:306 , ARG A:310 , EDO A:502 , HOH A:608 , HOH A:612 , HOH A:703 , HOH A:716 , HOH A:753 , ARG B:4 , TYR B:5 , ASN B:276 , HOH B:630 , HOH B:664	BINDING SITE FOR RESIDUE AMP A 501
02	AC2	SOFTWARE	HIS A:67 , THR A:93 , SER A:94 , AMP A:501 , HOH A:753	BINDING SITE FOR RESIDUE EDO A 502
03	AC3	SOFTWARE	ASP A:427 , VAL A:430 , LYS A:431 , ARG A:433 , EDO A:506	BINDING SITE FOR RESIDUE K A 503
04	AC4	SOFTWARE	ARG A:216 , SER A:306 , GLU A:309 , ARG A:310 , HOH A:693	BINDING SITE FOR RESIDUE EDO A 504
05	AC5	SOFTWARE	SER A:111 , TYR A:112 , LYS A:115 , HOH A:778	BINDING SITE FOR RESIDUE EDO A 505
06	AC6	SOFTWARE	VAL A:430 , LYS A:431 , K A:503	BINDING SITE FOR RESIDUE EDO A 506
07	AC7	SOFTWARE	ALA A:119 , ASP A:122 , SER A:123 , THR A:126 , LYS A:328	BINDING SITE FOR RESIDUE EDO A 507
08	AC8	SOFTWARE	ARG A:344 , K A:510 , HOH A:883 , ASP B:247	BINDING SITE FOR RESIDUE EDO A 508
09	AC9	SOFTWARE	SER A:140 , MET A:143 , PHE A:144 , ASN B:270	BINDING SITE FOR RESIDUE EDO A 509
10	BC1	SOFTWARE	ASP A:247 , EDO A:508 , HOH A:883 , HOH A:888 , ASP B:247 , EDO B:514	BINDING SITE FOR RESIDUE K A 510
11	BC2	SOFTWARE	GLN A:79 , HOH A:813 , HOH B:666 , HOH B:723 , HOH B:795	BINDING SITE FOR RESIDUE EDO B 501
12	BC3	SOFTWARE	ASN A:270 , SER B:140 , HIS B:141 , MET B:143 , PHE B:144 , SIN B:507	BINDING SITE FOR RESIDUE EDO B 502
13	BC4	SOFTWARE	ARG A:4 , TYR A:5 , ASN A:276 , HOH A:668 , HOH A:707 , LYS B:66 , HIS B:67 , ASP B:68 , SER B:94 , HIS B:141 , GLN B:212 , ARG B:301 , ILE B:303 , SER B:306 , ARG B:310 , SIN B:507 , HOH B:627 , HOH B:632 , HOH B:721 , HOH B:817	BINDING SITE FOR RESIDUE AMP B 503
14	BC5	SOFTWARE	ASP B:99 , SER B:103 , ILE B:214 , ILE B:219 , HOH B:613 , HOH B:635	BINDING SITE FOR RESIDUE EDO B 504
15	BC6	SOFTWARE	ARG B:216 , SER B:306 , GLU B:309 , ARG B:310 , HOH B:759	BINDING SITE FOR RESIDUE EDO B 505
16	BC7	SOFTWARE	GLN B:337 , ARG B:338 , ASP B:339 , ILE B:340	BINDING SITE FOR RESIDUE EDO B 506
17	BC8	SOFTWARE	ASN A:270 , HIS B:67 , THR B:93 , SER B:94 , SER B:140 , GLN B:212 , EDO B:502 , AMP B:503 , HOH B:863 , HOH B:866	BINDING SITE FOR RESIDUE SIN B 507
18	BC9	SOFTWARE	ARG A:54 , GLU A:78 , HOH A:661 , LEU B:125 , GLU B:129	BINDING SITE FOR RESIDUE CL B 508
19	CC1	SOFTWARE	GLU A:60 , LYS B:132 , ASP B:423 , ARG B:433 , HOH B:874	BINDING SITE FOR RESIDUE CL B 509
20	CC2	SOFTWARE	ASP B:427 , VAL B:430 , LYS B:431 , ARG B:433 , HOH B:873	BINDING SITE FOR RESIDUE K B 510
21	CC3	SOFTWARE	LYS B:173 , ASP B:174 , GLY B:175 , LEU B:176 , LEU B:204 , PRO B:205 , HOH B:708 , HOH B:862	BINDING SITE FOR RESIDUE EDO B 511
22	CC4	SOFTWARE	HOH A:770 , LYS B:132 , GLU B:133 , ILE B:422 , ASP B:423 , HOH B:875	BINDING SITE FOR RESIDUE EDO B 512
23	CC5	SOFTWARE	ASP A:122 , GLU B:35 , ASP B:36 , ARG B:37	BINDING SITE FOR RESIDUE EDO B 513
24	CC6	SOFTWARE	K A:510 , ARG B:344 , SER B:347	BINDING SITE FOR RESIDUE EDO B 514
25	CC7	SOFTWARE	HIS B:358 , ARG B:368 , HOH B:682	BINDING SITE FOR RESIDUE EDO B 515

(no "SS Bond" information available for 4EEI)

(no "Cis Peptide Bond" information available for 4EEI)

(no "SAP(SNP)/Variant" information available for 4EEI)

(no "PROSITE Motif" information available for 4EEI)

(no "Exon" information available for 4EEI)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4eeia_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheehhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhh..........hhhhhhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eei A   1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFKKNPISTENLTGMARMLRSHVSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVKAR 433
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    || 272       282       292       302       312       322       332       342       352       362       372     ||389       399       409       419       429    
                                                                                                                                                                                                                                                                                        255|                                                                                                           378|                                               
                                                                                                                                                                                                                                                                                         268                                                                                                            386

Chain B from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4eeib_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheehhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eei B   1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFKKNPISTENLTGMARMLRSHVSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVAFDLESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVKARGENLY 438
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    || 272       282       292       302       312       322       332       342       352       362       372       382|      395       405       415       425       435   
                                                                                                                                                                                                                                                                                        255|                                                                                                               382|                                                    
                                                                                                                                                                                                                                                                                         268                                                                                                                386

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: All alpha proteins (14657)

Fold: L-aspartase-like (67)

Superfamily: L-aspartase-like (67)

Family: automated matches (18)

Protein domain: automated matches (18)

Francisella tularensis [TaxId: 177416] (1)

1a	d4eeia_	A:
1b	d4eeib_	B:

(no "CATH Domain" information available for 4EEI)

(no "Pfam Domain" information available for 4EEI)

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Ligands, Modified Residues, Ions (5, 25)

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