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(-) Description

Title :  BASE PAIRING AND STRUCTURE INSIGHTS INTO THE 5-FORMYLCYTOSINE IN RNA DUPLEX
 
Authors :  Z. Luo, J. Sheng
Date :  18 Jan 16  (Deposition) - 27 Apr 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  M  (2x)
Keywords :  Rna, 5-Formylcytosine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Wang, Z. Luo, K. He, M. O. Delaney, D. Chen, J. Sheng
Base Pairing And Structural Insights Into The 5-Formylcytosine In Rna Duplex.
Nucleic Acids Res. V. 44 4968 2016
PubMed-ID: 27079978  |  Reference-DOI: 10.1093/NAR/GKW235

(-) Compounds

Molecule 1 - 5FC MODIFIED RNA
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213
Asymmetric Unit : ABCDEFGHIJKLM
Biological Unit 1 (1x): AB           
Biological Unit 2 (1x):   CD         
Biological Unit 3 (1x):     EF       
Biological Unit 4 (1x):       GH     
Biological Unit 5 (1x):         IJ   
Biological Unit 6 (1x):           KL 
Biological Unit 7 (2x):             M

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric Unit (1, 13)
No.NameCountTypeFull Name
1RSQ13Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 7 (1, 2)
No.NameCountTypeFull Name
1RSQ2Mod. Nucleotide5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)

(-) Sites  (0, 0)

(no "Site" information available for 5HNQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HNQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HNQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HNQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HNQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5HNQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:8
                                      
                   5hnq A 1 GUAxGUAC 8
                               |    
                               |    
                               4-RSQ


Chain B from PDB  Type:RNA  Length:8
                                      
                   5hnq B 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain C from PDB  Type:RNA  Length:8
                                      
                   5hnq C 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain D from PDB  Type:RNA  Length:8
                                      
                   5hnq D 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain E from PDB  Type:RNA  Length:8
                                      
                   5hnq E 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain F from PDB  Type:RNA  Length:8
                                      
                   5hnq F 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain G from PDB  Type:RNA  Length:8
                                      
                   5hnq G 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain H from PDB  Type:RNA  Length:8
                                      
                   5hnq H 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain I from PDB  Type:RNA  Length:8
                                      
                   5hnq I 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain J from PDB  Type:RNA  Length:8
                                      
                   5hnq J 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain K from PDB  Type:RNA  Length:8
                                      
                   5hnq K 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain L from PDB  Type:RNA  Length:8
                                      
                   5hnq L 1 GUAxGUAC 8
                               |    
                               4-RSQ


Chain M from PDB  Type:RNA  Length:8
                                      
                   5hnq M 1 GUAxGUAC 8
                               |    
                               4-RSQ
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HNQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HNQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HNQ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5HNQ)

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  5hnq
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 Related Entries

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(-) Related Entries Specified in the PDB File

5hnj