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Sequence, Chains, Asymmetric and Biological Units

Title BASE PAIRING AND STRUCTURE INSIGHTS INTO THE 5-FORMYLCYTOSIN DUPLEX
Keywords RNA, 5-FORMYLCYTOSINE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5HNQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 8 147 22
2  RNA    B 8 147 22
3  RNA    C 8 147 22
4  RNA    D 8 147 22
5  RNA    E 8 147 22
6  RNA    F 8 147 22
7  RNA    G 8 147 22
8  RNA    H 8 147 22
9  RNA    I 8 147 22
10  RNA    J 8 147 22
11  RNA    K 8 147 22
12  RNA    L 8 147 22
13  RNA    M 8 147 22
14 Water     5 0 6
total       109 1911 292

Nucleic acids
Unit 1 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 2 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 3 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 4 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 5 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 6 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 7 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 8 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 9 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 10 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 11 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 12 G1 U2 A3 RSQ4 G5 U6 A7 C8
Unit 13 G1 U2 A3 RSQ4 G5 U6 A7 C8

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany