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(-) Description

Title :  MYOSIN VC PRE-POWERSTROKE STATE
 
Authors :  V. Ropars, O. Pylypenko, H. L. Sweeney, A. Houdusse
Date :  16 Jan 16  (Deposition) - 07 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Motor Domain, Myosin, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Ropars, Z. Yang, T. Isabet, F. Blanc, K. Zhou, T. Lin, X. Liu, P. Hissier, F. Samazan, B. Amigues, E. D. Yang, H. Park, O. Pylypenko, M. Cecchini, C. V. Sindelar, H. L. Sweeney, A. Houdusse
The Myosin X Motor Is Optimized For Movement On Actin Bundles.
Nat Commun V. 7 12456 2016
PubMed-ID: 27580874  |  Reference-DOI: 10.1038/NCOMMS12456

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VC
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 10469
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDEUS 5-754
    Gene: MYO5C
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3EDO3Ligand/Ion1,2-ETHANEDIOL
4MG2Ligand/IonMAGNESIUM ION
5VO42Ligand/IonVANADATE ION
Biological Unit 1 (4, 4)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MG-1Ligand/IonMAGNESIUM ION
5VO41Ligand/IonVANADATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2DMS-1Ligand/IonDIMETHYL SULFOXIDE
3EDO2Ligand/Ion1,2-ETHANEDIOL
4MG-1Ligand/IonMAGNESIUM ION
5VO41Ligand/IonVANADATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:168 , SER A:216 , VO4 A:802 , ADP A:803 , HOH A:903 , HOH A:983binding site for residue MG A 801
02AC2SOFTWARESER A:163 , GLY A:164 , LYS A:167 , ASN A:212 , SER A:215 , SER A:216 , TYR A:437 , GLY A:438 , MG A:801 , ADP A:803 , HOH A:903 , HOH A:976 , HOH A:983binding site for residue VO4 A 802
03AC3SOFTWAREASN A:109 , PRO A:110 , LYS A:112 , TYR A:117 , GLY A:164 , ALA A:165 , GLY A:166 , LYS A:167 , THR A:168 , VAL A:169 , ASN A:212 , ASN A:214 , MG A:801 , VO4 A:802 , HOH A:903 , HOH A:983 , HOH A:1008 , HOH A:1012 , HOH A:1019binding site for residue ADP A 803
04AC4SOFTWARELYS A:95 , LEU A:96 , ILE A:97 , TYR A:98 , HOH A:941binding site for residue EDO A 804
05AC5SOFTWAREASN A:284 , MET A:288 , ARG A:398 , ASP A:399binding site for residue DMS A 805
06AC6SOFTWARETHR B:168 , SER B:216 , VO4 B:802 , ADP B:803 , HOH B:902 , HOH B:938binding site for residue MG B 801
07AC7SOFTWARESER B:163 , GLY B:164 , LYS B:167 , ASN B:212 , SER B:215 , SER B:216 , TYR B:437 , GLY B:438 , MG B:801 , ADP B:803 , HOH B:902 , HOH B:936 , HOH B:938binding site for residue VO4 B 802
08AC8SOFTWAREASN B:109 , PRO B:110 , LYS B:112 , TYR B:117 , GLY B:164 , ALA B:165 , GLY B:166 , LYS B:167 , THR B:168 , VAL B:169 , ASN B:212 , ASN B:214 , MG B:801 , VO4 B:802 , HOH B:902 , HOH B:920 , HOH B:938 , HOH B:971binding site for residue ADP B 803
09AC9SOFTWAREVAL B:297 , GLU B:302 , HOH B:955binding site for residue EDO B 804
10AD1SOFTWAREASN B:284 , VAL B:395 , ARG B:398 , ASP B:399 , HOH B:977binding site for residue EDO B 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HMP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HMP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HMP)

(-) Exons   (0, 0)

(no "Exon" information available for 5HMP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:697
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee...eeeeeee...........eee.....eee...................hhhhh...hhhhhhhhhhhhhhh....eeee..eeeee.........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhh......hhhhh......hhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...eee...eee....hhhhhhhhhhh..hhhhhhhhh.eeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh.eee...eeee....hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hmp A   5 ELYTQYNRVWIPDPEEVWKSAEIAKDYRVGDKVLRLLLEDGTELDYSVNPLPPLRNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDEQNQIIGANMSTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRAEMVETQKTFTLLGFKEDFQMDVFKILAAILHLGNVQITAVGNERSSVSEDDSHLKVFCELLGLESGRVAQWLCNRKIVTSSETVVKPMTRPQAVNARDALAKKIYAHLFDFIVERINQALQFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNRNPLFEKPRMSNTSFVIQHFADKVEYKCEGFLEKNRDTVYDMLVEILRASKFHLCANFFQENRTTVGSKFRSSLYLLMETLNATTPHYVRCIKPNDEKLPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYIEFYSRKKEVCKVVLHRDSNQYQFGKTKIFFRAGQVAYLEK 750
                                    14        24        34        44        54|       66        76        86        96       106       116       126       136       146       156       166       176       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589   ||  626       636       646       656       666       676       686       696 ||    720  ||   733       743       
                                                                            54|                                                                                                                            184|                                                                                                                                                                                                                                                                                                                                                                                                                  593|                                                                          698|       723|                       
                                                                             57                                                                                                                             188                                                                                                                                                                                                                                                                                                                                                                                                                   621                                                                           713        727                       


Chain B from PDB  Type:PROTEIN  Length:712
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee...eeeeeee.........eeeeee....eeeee...................hhhhh...hhhhhhhhhhhhhh.....eeee..eeeee.........hhhhhhhh..........hhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhh......hhhhh......hhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eee...eee....hhhhhhhhhhhh.hhhhhhhhh.eeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhh......hhhhhhhhhhhhhh.hhh.eee....eee..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hmp B   5 ELYTQYNRVWIPDPEEVWKSAEIAKDYRVGDKVLRLLLEDGTELDYSVNPESLPPLRNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDEQNQIIGANMSTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRAEMVETQKTFTLLGFKEDFQMDVFKILAAILHLGNVQITAVGNERSSVSEDDSHLKVFCELLGLESGRVAQWLCNRKIVTSSETVVKPMTRPQAVNARDALAKKIYAHLFDFIVERINQALQFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNRNPLFEKPRMSNTSFVIQHFADKVEYKCEGFLEKNRDTVYDMLVEILRASKFHLCANFFQENRTTVGSKFRSSLYLLMETLNATTPHYVRCIKPNDEKLPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYGILQESDKKEVCKVVLHRLIQDSNQYQFGKTKIFFRAGQVAYLEKLRLD 754
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589   ||  626       636       646       656       666       676       686       696     ||712       722       732       742       752  
                                                                                                                                                                                                            183|                                                                                                                                                                                                                                                                                                                                                                                                                 593|                                                                              702|||                                           
                                                                                                                                                                                                             189                                                                                                                                                                                                                                                                                                                                                                                                                  621                                                                               706||                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     707|                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      711
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HMP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HMP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HMP)

(-) Gene Ontology  (7, 7)

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  5hmp
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  MYO5C_HUMAN | Q9NQX4
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 Related Entries

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        MYO5C_HUMAN | Q9NQX4: 4l8t 4zg4

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