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(-) Description

Title :  MYOSIN VC PRE-POWERSTROKE
 
Authors :  V. Ropars, O. Pylypenko, L. Sweeney, A. Houdusse
Date :  22 Apr 15  (Deposition) - 23 Mar 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  B,E
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  E  (1x)
Keywords :  Myosin, Pre-Powerstroke, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. F. Wulf, V. Ropars, S. Fujita-Becker, M. Oster, G. Hofhaus, L. G. Trabuco, O. Pylypenko, H. L. Sweeney, A. M. Houdusse, R. R. Schroder
Force-Producing Adp State Of Myosin Bound To Actin.
Proc. Natl. Acad. Sci. Usa V. 113 E1844 2016
PubMed-ID: 26976594  |  Reference-DOI: 10.1073/PNAS.1516598113

(-) Compounds

Molecule 1 - MYOSIN-VC
    Chains: B, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: MYO5C
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : BE
Biological Unit 1 (1x): B 
Biological Unit 2 (1x):  E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG2Ligand/IonMAGNESIUM ION
4VO42Ligand/IonVANADATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
4VO41Ligand/IonVANADATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
4VO41Ligand/IonVANADATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR B:168 , SER B:216 , VO4 B:802 , ADP B:803 , HOH B:918 , HOH B:1011binding site for residue MG B 801
2AC2SOFTWARESER B:163 , GLY B:164 , LYS B:167 , ASN B:212 , SER B:215 , SER B:216 , TYR B:437 , GLY B:438 , MG B:801 , ADP B:803 , HOH B:918 , HOH B:920 , HOH B:1011binding site for residue VO4 B 802
3AC3SOFTWAREASN B:109 , PRO B:110 , TYR B:111 , LYS B:112 , TYR B:117 , GLY B:164 , ALA B:165 , GLY B:166 , LYS B:167 , THR B:168 , VAL B:169 , ASN B:212 , ASN B:214 , MG B:801 , VO4 B:802 , HOH B:918 , HOH B:919 , HOH B:1011 , HOH B:1020 , HOH B:1043 , HOH B:1157binding site for residue ADP B 803
4AC4SOFTWARESER B:353 , HIS B:354 , HOH B:908binding site for residue EDO B 804
5AC5SOFTWARETHR E:168 , SER E:216 , VO4 E:802 , ADP E:803 , HOH E:952 , HOH E:1007binding site for residue MG E 801
6AC6SOFTWARESER E:163 , GLY E:164 , LYS E:167 , ASN E:212 , SER E:215 , SER E:216 , TYR E:437 , GLY E:438 , MG E:801 , ADP E:803 , HOH E:952 , HOH E:969 , HOH E:1007binding site for residue VO4 E 802
7AC7SOFTWAREASN E:109 , PRO E:110 , TYR E:111 , LYS E:112 , TYR E:117 , GLY E:164 , ALA E:165 , GLY E:166 , LYS E:167 , THR E:168 , VAL E:169 , ASN E:212 , MG E:801 , VO4 E:802 , HOH E:917 , HOH E:952 , HOH E:960 , HOH E:1007 , HOH E:1027binding site for residue ADP E 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZG4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys B:183 -Ser B:184
2Ala E:188 -His E:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZG4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZG4)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZG4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:705
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....eeeeee...eeeeeee........eeeeee..eeeeee...................hhhhh...hhhhhhhhhhhhhhh....eeee..eeeee.........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhh...hhhhhhhh......hhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eee...eee....hhhhhhhhhhhh.hhhhhhhhhheeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh.hhhhhhhhhh.......eee....eee..hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zg4 B   1 MAVAELYTQYNRVWIPDPEEVWKSAEIAKDYRVGKVLRLLLEDGELDYSVNPESLPPLRNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSGSHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDEQNQIIGANMSTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRAEMVETQKTFTLLGFKEDFQMDVFKILAAILHLGNVQITAVGNERSSVSEDDSHLKVFCELLGLESGRVAQWLCNRKIVTSSETVVKPMTRPQAVNARDALAKKIYAHLFDFIVERINQALQFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNRNPLFEKPRMSNTSFVIQHFADKVEYKCEGFLEKNRDTVYDMLVEILRASKFHLCANFFQENRTTVGSKFRSSLYLLMETLNATTPHYVRCIKPNDEKLPFEFDSKRIVQQLRACGVLETIRISAQSYPSRYIEFYSRYKKEVCKVVLHRLIQDSNQYQFGKTKIFFRGQVAYLEKLR 752
                                    10        20        30   ||   41   ||   52        62        72        82        92       102       112       122       132       142       152       162       172       182   ||  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       621       631       641       651       661       671       681       693     ||716       726       736    || 747     
                                                            34|       45|                                                                                                                                        186|                                                                                                                                                                                                                                                                                                                                                                                                                 593|                                                                 689|    699|                         741|         
                                                             36        47                                                                                                                                         189                                                                                                                                                                                                                                                                                                                                                                                                                  621                                                                  692     713                          743         


Chain E from PDB  Type:PROTEIN  Length:711
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....eeeeee...eeeeeee.........eeeee...eee...................hhhhh...hhhhhhhhhhhhhhh....eeee..eeeee.........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhh...hhhhhhhh......hhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eee...eee....hhhhhhhhhhhh.hhhhhhhhhheeeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh.....ee.......eeeee....eeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh..........hhhhhhhhh.....eee....eee...hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zg4 E   1 MAVAELYTQYNRVWIPDPEEVWKSAEIAKDYRVGDKVLRLLLELDYSVNPESLPPLRNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSGSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDEQNQIIGANMSTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRAEMVETQKTFTLLGFKEDFQMDVFKILAAILHLGNVQITAVGNERSSVSEDDSHLKVFCELLGLESGRVAQWLCNRKIVTSSETVVKPMTRPQAVNARDALAKKIYAHLFDFIVERINQALQFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEDIWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNRNPLFEKPRMSNTSFVIQHFADKVEYKCEGFLEKNRDTVYDMLVEILRASKFHLCANFFQENRTTVGSKFRSSLYLLMETLNATTPHYVRCIKPNDEKLPFEFDSKRIVQQLRACGVLETIRISAQSYPWTYIEFYSRYGILKQELSFVCKVVLHRLIQDSNQYQFGKTKIFFRAVAYLEKLRLD 754
                                    10        20        30        40  ||    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474     ||485       495       505       515       525       535       545       555       565       575       585       622       632       642       652       662       672       682    || 694       706   ||  721       731       741||     753 
                                                                     43|                                                                                                                                                                                                                                                                                                                                                                                                                                             480|                                                                                                            593|                                                               687|         702|  710|                       742|         
                                                                      48                                                                                                                                                                                                                                                                                                                                                                                                                                              482                                                                                                             621                                                                690          705   716                        745
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZG4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZG4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZG4)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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    Ala E:188 - His E:189   [ RasMol ]  
    Lys B:183 - Ser B:184   [ RasMol ]  
 
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        MYO5C_HUMAN | Q9NQX4: 4l8t 5hmp

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