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(-) Description

Title :  CRYSTAL STRUCTURE OF C-CBL TKBD DOMAIN IN COMPLEX WITH SPRY2 PEPTIDE (36-60, PY55) REFINED TO 1.8A RESOLUTION (P6 FORM)
 
Authors :  S. Lovell, K. P. Battaile, N. Mehzabeen, N. Zhang, A. Cooper, P. Gao, R. P
Date :  14 Jan 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Spry2, Cbl, Protein-Protein Interaction, Anticancer Target, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Zhang, D. Ferris, S. Lovell, A. Smalter-Hall, K. P. Battaile, A. Anbanandam, P. Gao, R. Hanzlik, R. P. Perez
Crystal Structure Of C-Cbl Tkbd Domain In Complex With Spry Peptide (36-60, Py55) Refined To 1. 8A Resolution (P6 Form)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE CBL
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTBSG
    Expression System Strain: BL21 (DE3) PLYSES-RARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: TYROSINE KINASE BINDING DOMAIN (TKBD), RESIDUES 47-351
    Gene: CBL, CBL2, RNF55
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE,PROTO-ONCOGENE C- CBL,RING FINGER PROTEIN 55,SIGNAL TRANSDUCTION PROTEIN CBL
 
Molecule 2 - PROTEIN SPROUTY HOMOLOG 2
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 36-60
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHESIZED BY NEW ENGLAND PEPTIDE WITH AN ACETYLATED N-TERMINUS
    Synonym: SPRY-2
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CL2Ligand/IonCHLORIDE ION
3NA1Ligand/IonSODIUM ION
4PTR1Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:183 , PRO A:250 , TRP A:251 , HOH A:651binding site for residue CL A 401
2AC2SOFTWAREPHE A:179 , ILE A:181 , ARG A:191binding site for residue CL A 402
3AC3SOFTWAREASP A:229 , THR A:231 , ASN A:233 , TYR A:235 , GLU A:240 , HOH A:539binding site for residue NA A 403
4AC4SOFTWAREARG A:206 , HIS A:210 , ILE A:215 , SER A:217 , GLY A:218 , ARG A:280 , ARG A:343 , HOH A:679 , HOH A:705binding site for residue 1PE A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HKY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:81 -Pro A:82
2Gln A:249 -Pro A:250

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HKY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HKY)

(-) Exons   (0, 0)

(no "Exon" information available for 5HKY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhh...eeehhhhhhhhhhhh...hhhhhhhhhhhhh.....eeehhhhhhhhhhh.hhhhhhhhhhhhh..........hhhhhhhhhhhhh....eeeeee.......eeeeee.....eeee.....hhhhhhhhhhhh....ee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hky A  48 PGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYEGKMETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRITKADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWSSLLRNWNSLAVTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDGRNQNPDLT 350
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347   


Chain B from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author ...................... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 5hky B  39 HVLSLDQIRAIRNTNEyTEGPT  60
                                    48      | 58  
                                           55-PTR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HKY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HKY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HKY)

(-) Gene Ontology  (66, 75)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBL_HUMAN | P22681: 1b47 1fbv 1yvh 2cbl 2juj 2k4d 2oo9 2y1m 2y1n 3bum 3bun 3buo 3buw 3bux 3ob1 3ob2 3plf 4a49 4a4b 4a4c 4gpl 5hkw 5hkx 5hkz 5hl0 5j3x
        SPY2_HUMAN | O43597: 3bum 3ob1 5hkz 5hl0

(-) Related Entries Specified in the PDB File

5hkw 5hkx 5hkz 5hl0