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(-) Description

Title :  CRYSTAL STRUCTURE OF C-CBL TKBD-RING DOMAINS (Y371E MUTANT) REFINED TO 1.85 A RESOLUTION
 
Authors :  S. Lovell, K. P. Battaile, N. Mehzabeen, N. Zhang, A. Cooper, P. Gao, R. P
Date :  14 Jan 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Spry2, Cbl, Protein-Protein Interaction, Anticancer Target, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Zhang, D. Ferris, S. Lovell, A. Smalter-Hall, K. P. Battaile, A. Anbanandam, P. Gao, R. Hanzlik, R. P. Perez
Crystal Structure Of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined To 1. 85 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE CBL
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTBSG
    Expression System Strain: BL21 (DE3) PLYSES-RARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: TYROSINE KINASE BINDING AND RING DOMAINS (TKBD-RING), RESIDUES 47-435
    Gene: CBL, CBL2, RNF55
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE,PROTO-ONCOGENE C- CBL,RING FINGER PROTEIN 55,SIGNAL TRANSDUCTION PROTEIN CBL

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2NA1Ligand/IonSODIUM ION
3ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:328 , ASN A:346 , PRO A:347 , ASP A:348 , LEU A:349 , HOH A:635binding site for residue EDO A 501
2AC2SOFTWARECYS A:396 , HIS A:398 , CYS A:416 , CYS A:419binding site for residue ZN A 502
3AC3SOFTWARECYS A:381 , CYS A:384 , CYS A:401 , CYS A:404binding site for residue ZN A 503
4AC4SOFTWAREASP A:229 , THR A:231 , ASN A:233 , TYR A:235 , GLU A:240 , HOH A:667binding site for residue NA A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HKX)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Pro A:81 -Pro A:82
2Gln A:249 -Pro A:250
3Glu A:394 -Pro A:395

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HKX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HKX)

(-) Exons   (0, 0)

(no "Exon" information available for 5HKX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhh...eeehhhhhhhhhh.....hhhhhhhhhhhhh.....eeehhhhhhhhhhh.hhhhhhhhhhhhhh....eeee.hhhhhhhhhhh......eeeeee.......eeeeee.....eeee.....hhhhhhhhhhhh....ee........hhhhh..hhhhhhhhhhhhhhhh...........eeee....eehhhhhhhhhhh.............eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hkx A  48 PGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYEGKMETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRITKADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWSSLLRNWNSLAVTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDGRNQNPDLTGLCEVTQEQYELECEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 429
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      |365       375       385       395       405       415       425    
                                                                                                                                                                                                                                                                                                                                            354|                                                                  
                                                                                                                                                                                                                                                                                                                                             363
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HKX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HKX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HKX)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5hkx
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBL_HUMAN | P22681: 1b47 1fbv 1yvh 2cbl 2juj 2k4d 2oo9 2y1m 2y1n 3bum 3bun 3buo 3buw 3bux 3ob1 3ob2 3plf 4a49 4a4b 4a4c 4gpl 5hkw 5hky 5hkz 5hl0 5j3x

(-) Related Entries Specified in the PDB File

5hkw 5hky 5hkz 5hl0