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(-) Description

Title :  CRYSTAL STRUCTURE OF B3 METALLO-BETA-LACTAMASE L1 IN COMPLEX WITH A PHOSPHONATE-BASED INHIBITOR
 
Authors :  P. Hinchliffe, J. Spencer
Date :  09 Jan 16  (Deposition) - 18 Jan 17  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Carbapenamase, Pyridine, Phosphonate, Antibiotic Resistance, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Hinchliffe, C. A. Tanner, G. Labbe, V. J. Goodfellow, A. P. Krismanich, E. E. Whittle, J. Spencer, G. I. Dmitrienko
Structural Basis Of Metallo-Beta-Lactamase Inhibition By Phosphonates
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE L1
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: SOLUBL21
    Organism Common: PSEUDOMONAS MALTOPHILIA
    Organism Scientific: STENOTROPHOMONAS MALTOPHILIA
    Organism Taxid: 40324
    Synonym: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, PENICILLINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
160N1Ligand/Ion6-[(~{S})-OXIDANYL(PHOSPHONO)METHYL]PYRIDINE-2-CARBOXYLIC ACID
2SO42Ligand/IonSULFATE ION
3ZN1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:116 , HIS A:118 , HIS A:196 , 60N A:402 , HOH A:505binding site for residue ZN A 401
2AC2SOFTWAREHIS A:116 , HIS A:118 , ASP A:120 , HIS A:121 , HIS A:196 , SER A:221 , SER A:225 , PRO A:227 , HIS A:263 , ALA A:266 , ZN A:401 , HOH A:501 , HOH A:505 , HOH A:508 , HOH A:581 , HOH A:645binding site for residue 60N A 402
3AC3SOFTWAREARG A:172 , ILE A:180 , THR A:181 , HOH A:589binding site for residue SO4 A 403
4AC4SOFTWAREARG A:102 , HOH A:515 , HOH A:559 , HOH A:621binding site for residue SO4 A 404

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:256 -A:296

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HH6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HH6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HH6)

(-) Exons   (0, 0)

(no "Exon" information available for 5HH6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh....eeee..eee........eeeee..eeeee...hhhhhhhhhhhhhhh..hhh.eeeee....hhhhhhhhhhhhhhh..eeeehhhhhhhhhh....................ee.....eeee..eeeeeee........eeeeeeeee..eeeeeee..................hhhhhhhhhhhhhhh....eee..hhhhhh....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hh6 A  24 EVPLPQLRAYTVDASWLQPMAPLQIADHTWQIGTEDLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQKFDGQLAKETAG 317
                                    33        43        53   ||   72        82    ||  93       103       113       123       133       143       153   ||  165||     176       186    || 197       207       217    || 229       239       249       259       269      |291       301       311      
                                                            57|                  87|                                                                 157|   166|                    191|                          222|                                                276|                            
                                                             67                   89                                                                  160    168                     193                           225                                                 289
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HH6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HH6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HH6)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  5hh6
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  BLA1_STEMA | P52700
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLA1_STEMA | P52700: 1sml 2aio 2fm6 2fu6 2fu7 2fu8 2fu9 2gfj 2gfk 2h6a 2hb9 2qdt 2qin 2qjs 5dpx 5evb 5evd 5evk 5hh5

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HH6)