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(-) Description

Title :  CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE L1 IN COMPLEX WITH THE BISTHIAZOLIDINE INHIBITOR D-CS319
 
Authors :  P. Hinchliffe, J. Spencer
Date :  19 Nov 15  (Deposition) - 01 Jun 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Carbapenemase, Antibiotic Resistance, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Hinchliffe, M. M. Gonzalez, M. F. Mojica, J. M. Gonzalez, V. Castillo, C. Saiz, M. Kosmopoulou, C. L. Tooke, L. I. Llarrull, G. Mahler, R. A. Bonomo, A. J. Vila, J. Spencer
Cross-Class Metallo-Beta-Lactamase Inhibition By Bisthiazolidines Reveals Multiple Binding Modes.
Proc. Natl. Acad. Sci. Usa V. 113 E3745 2016
PubMed-ID: 27303030  |  Reference-DOI: 10.1073/PNAS.1601368113

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE L1
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: POPIN-F
    Expression System Taxid: 469008
    Expression System Variant: SOLU
    Organism Common: PSEUDOMONAS MALTOPHILIA
    Organism Scientific: STENOTROPHOMONAS MALTOPHILIA
    Organism Taxid: 40324
    Synonym: BETA-LACTAMASE TYPE II,PENICILLINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
13R91Ligand/Ion(3S,5S,7AR)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2SO42Ligand/IonSULFATE ION
3ZN2Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:116 , HIS A:118 , HIS A:196 , 3R9 A:403binding site for residue ZN A 401
2AC2SOFTWAREASP A:120 , HIS A:121 , HIS A:263 , 3R9 A:403 , HOH A:605binding site for residue ZN A 402
3AC3SOFTWARETYR A:33 , HIS A:118 , ASP A:120 , HIS A:121 , PHE A:156 , ILE A:162 , HIS A:196 , PRO A:227 , HIS A:263 , ZN A:401 , ZN A:402 , HOH A:503 , HOH A:543 , HOH A:605 , HOH A:631binding site for residue 3R9 A 403
4AC4SOFTWAREARG A:172 , VAL A:179 , ILE A:180 , THR A:181 , HOH A:638binding site for residue SO4 A 404
5AC5SOFTWAREARG A:102 , GLY A:211 , HOH A:524 , HOH A:562binding site for residue SO4 A 405

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:256 -A:296

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EVB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EVB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EVB)

(-) Exons   (0, 0)

(no "Exon" information available for 5EVB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh....eeee..eee........eeeee..eeeee...hhhhhhhhhhhhhhh..hhh.eeeee....hhhhhhhhhhhhhhh..eeeehhhhhhhhhh....................ee.....eeee..eeeeeee........eeeeeeeee..eeeeeee..................hhhhhhhhhhhhhhh....eee..hhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5evb A  24 EVPLPQLRAYTVDASWLQPMAPLQIADHTWQIGTEDLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQKFDGQLAKETAG 317
                                    33        43        53   ||   72        82    ||  93       103       113       123       133       143       153   ||  165||     176       186    || 197       207       217    || 229       239       249       259       269      |291       301       311      
                                                            57|                  87|                                                                 157|   166|                    191|                          222|                                                276|                            
                                                             67                   89                                                                  160    168                     193                           225                                                 289
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EVB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EVB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EVB)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        BLA1_STEMA | P52700: 1sml 2aio 2fm6 2fu6 2fu7 2fu8 2fu9 2gfj 2gfk 2h6a 2hb9 2qdt 2qin 2qjs 5dpx 5evd 5evk 5hh5 5hh6

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