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(-) Description

Title :  CRYSTAL STRUCTURES OF EV71 3C PROTEASE IN COMPLEX WITH NK-1.8K
 
Authors :  Y. Wang
Date :  16 Aug 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Ev71 3C Protease Nk-1. 8K, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wang, L. Cao, Y. Zhai, Z. Yin, Y. Sun, L. Shang
Structure Of Ev71 3C(Pro) In Complex With Nk-1. 8K: Indications For The Development Of Anti-Enterovirus Proteas Inhibitor
Antimicrob. Agents 2017 Chemother.
PubMed-ID: 28461310  |  Reference-DOI: 10.1128/AAC.00298-17

(-) Compounds

Molecule 1 - 3C PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
    Expression System Taxid: 1182032
    Organism Scientific: ENTEROVIRUS A71
    Organism Taxid: 39054

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A    
Biological Unit 2 (1x):  B   
Biological Unit 3 (1x):   C  
Biological Unit 4 (1x):    D 
Biological Unit 5 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
15GI5Ligand/Ion~{N}-[(2~{S})-3-(4-FLUOROPHENYL)-1-OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-[(3~{S})-2-OXIDANYLIDENEPIPERIDIN-3-YL]PROPAN-2-YL]AMINO]PROPAN-2-YL]-5-METHYL-1,2-OXAZOLE-3-CARBOXAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
15GI1Ligand/Ion~{N}-[(2~{S})-3-(4-FLUOROPHENYL)-1-OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-[(3~{S})-2-OXIDANYLIDENEPIPERIDIN-3-YL]PROPAN-2-YL]AMINO]PROPAN-2-YL]-5-METHYL-1,2-OXAZOLE-3-CARBOXAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
15GI1Ligand/Ion~{N}-[(2~{S})-3-(4-FLUOROPHENYL)-1-OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-[(3~{S})-2-OXIDANYLIDENEPIPERIDIN-3-YL]PROPAN-2-YL]AMINO]PROPAN-2-YL]-5-METHYL-1,2-OXAZOLE-3-CARBOXAMIDE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
15GI1Ligand/Ion~{N}-[(2~{S})-3-(4-FLUOROPHENYL)-1-OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-[(3~{S})-2-OXIDANYLIDENEPIPERIDIN-3-YL]PROPAN-2-YL]AMINO]PROPAN-2-YL]-5-METHYL-1,2-OXAZOLE-3-CARBOXAMIDE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
15GI1Ligand/Ion~{N}-[(2~{S})-3-(4-FLUOROPHENYL)-1-OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-[(3~{S})-2-OXIDANYLIDENEPIPERIDIN-3-YL]PROPAN-2-YL]AMINO]PROPAN-2-YL]-5-METHYL-1,2-OXAZOLE-3-CARBOXAMIDE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
15GI1Ligand/Ion~{N}-[(2~{S})-3-(4-FLUOROPHENYL)-1-OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-[(3~{S})-2-OXIDANYLIDENEPIPERIDIN-3-YL]PROPAN-2-YL]AMINO]PROPAN-2-YL]-5-METHYL-1,2-OXAZOLE-3-CARBOXAMIDE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:25 , HIS A:40 , GLU A:71 , LEU A:127 , LYS A:130 , THR A:132 , THR A:142 , LYS A:143 , CYS A:147 , HIS A:161 , ILE A:162 , GLY A:163 , GLY A:164binding site for residue 5GI A 201
2AC2SOFTWAREPHE B:25 , THR B:26 , ARG B:39 , HIS B:40 , GLU B:71 , LEU B:127 , SER B:128 , LYS B:130 , THR B:132 , THR B:142 , LYS B:143 , ALA B:144 , GLY B:145 , GLN B:146 , GLY B:148 , GLY B:149 , HIS B:161 , ILE B:162 , GLY B:163 , GLY B:164binding site for Di-peptide 5GI B 201 and CYS B 147
3AC3SOFTWAREPHE C:25 , THR C:26 , HIS C:40 , GLU C:71 , LEU C:127 , SER C:128 , LYS C:130 , THR C:142 , LYS C:143 , GLY C:145 , GLN C:146 , GLY C:148 , GLY C:149 , HIS C:161 , ILE C:162 , GLY C:163 , GLY C:164binding site for Di-peptide 5GI C 201 and CYS C 147
4AC4SOFTWAREPHE D:25 , THR D:26 , HIS D:40 , ASN D:69 , GLU D:71 , LEU D:127 , SER D:128 , THR D:132 , THR D:142 , LYS D:143 , ALA D:144 , GLY D:145 , GLN D:146 , GLY D:148 , GLY D:149 , HIS D:161 , ILE D:162 , GLY D:163 , GLY D:164 , HOH D:304binding site for Di-peptide 5GI D 201 and CYS D 147
5AC5SOFTWAREPHE E:25 , THR E:26 , HIS E:40 , ASN E:69 , GLU E:71 , LEU E:127 , LYS E:130 , THR E:132 , THR E:142 , LYS E:143 , GLY E:145 , GLN E:146 , GLY E:148 , GLY E:149 , HIS E:161 , ILE E:162 , GLY E:163 , GLY E:164binding site for Di-peptide 5GI E 201 and CYS E 147

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GSO)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly B:1 -Pro B:2
2Gly D:67 -Val D:68
3Gly E:67 -Val E:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GSO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GSO)

(-) Exons   (0, 0)

(no "Exon" information available for 5GSO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeee....eeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gso A   1 GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 


Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeee....eeeeeeee...........eee....eeeeeeee....eeeee.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gso B   1 GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 


Chain C from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..eeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeee......eeeeeeee..........eeee..eeeeeeeee...eeeeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gso C   1 GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 


Chain D from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeeeee..eeeeeeeeeeeeeeeeee....eeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gso D   3 SLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172         


Chain E from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..eeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeee......eeeeeee...........eeee..eeeeeeeee....eeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gso E   1 GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GSO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GSO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GSO)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        E7E815_9ENTO | E7E815: 5gsw
UniProtKB/TrEMBL
        E7E815_9ENTO | E7E815: 3qzq 3qzr 3r0f

(-) Related Entries Specified in the PDB File

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