3R0F - JenaLib

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Title :   HUMAN ENTEROVIRUS 71 3C PROTEASE MUTANT H133G IN COMPLEX WITH RUPINTRIVIR

Authors :   J. Wang, T. Fan, X. Yao, Z. Wu, L. Guo, X. Lei, J. Wang, M. Wang, Q. Jin, S. Cu

Date :   08 Mar 11 (Deposition) - 10 Aug 11 (Release) - 06 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.31

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Chymotrypsin-Fold, Beta-Ribbon, Hydrolysis, Nucleus, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Wang, T. Fan, X. Yao, Z. Wu, L. Guo, X. Lei, J. Wang, M. Wang, Q. Jin, S. Cui
Crystal Structures Of Enterovirus 71 3C Protease Complexed With Rupintrivir Reveal The Roles Of Catalytically Importan Residues.
J. Virol. V. 85 10021 2011
PubMed-ID: 21813612 | Reference-DOI: 10.1128/JVI.05107-11

Molecule 1 - 3C PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	ROSETTA
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	POLYPROTEIN
	Mutation	:	YES
	Organism Scientific	:	HUMAN ENTEROVIRUS 71
	Organism Taxid	:	39054
	Strain	:	71
	Synonym	:	3C PROTEASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	AG7	2	Ligand/Ion	4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	AG7	1	Ligand/Ion	4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	AG7	1	Ligand/Ion	4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:39 , HIS A:40 , GLU A:71 , LEU A:125 , ASN A:126 , LEU A:127 , SER A:128 , LYS A:130 , THR A:142 , LYS A:143 , ALA A:144 , GLY A:145 , CYS A:147 , HIS A:161 , ILE A:162 , GLY A:163 , GLY A:164 , ASN A:165 , PHE A:170 , EDO A:185 , HOH A:316	BINDING SITE FOR RESIDUE AG7 A 501
2	AC2	SOFTWARE	GLN A:17 , TRP A:48 , GLU A:50 , HIS A:51	BINDING SITE FOR RESIDUE EDO A 184
3	AC3	SOFTWARE	GLN A:22 , GLY A:23 , HIS A:24 , GLY A:145 , HOH A:203 , AG7 A:501	BINDING SITE FOR RESIDUE EDO A 185
4	AC4	SOFTWARE	LEU A:53 , HOH A:257 , ARG B:39 , HIS B:40 , GLU B:71 , ASN B:126 , LEU B:127 , SER B:128 , LYS B:130 , THR B:142 , LYS B:143 , ALA B:144 , GLY B:145 , CYS B:147 , HIS B:161 , ILE B:162 , GLY B:163 , GLY B:164 , ASN B:165 , PHE B:170 , EDO B:185	BINDING SITE FOR RESIDUE AG7 B 501
5	AC5	SOFTWARE	GLN B:17 , TRP B:48 , GLU B:50 , HIS B:51	BINDING SITE FOR RESIDUE EDO B 184
6	AC6	SOFTWARE	GLN B:22 , GLY B:23 , HIS B:24 , GLY B:145 , HOH B:197 , HOH B:247 , AG7 B:501	BINDING SITE FOR RESIDUE EDO B 185

(no "SS Bond" information available for 3R0F)

(no "Cis Peptide Bond" information available for 3R0F)

(no "SAP(SNP)/Variant" information available for 3R0F)

(no "PROSITE Motif" information available for 3R0F)

(no "Exon" information available for 3R0F)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:181
 aligned with E7E815_9ENTO | E7E815 from UniProtKB/TrEMBL  Length:183

    Alignment length:181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
         E7E815_9ENTO     1 GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
               SCOP domains d3r0fa_ A: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r0f A   1 GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTGRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFAS 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:176
 aligned with E7E815_9ENTO | E7E815 from UniProtKB/TrEMBL  Length:183

    Alignment length:176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174      
         E7E815_9ENTO     5 DFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFA 180
               SCOP domains d3r0fb_ B: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r0f B   5 DFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNVLDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTGRTMMYNFPTKAGQCGGVVTSVGKIIGIHIGGNGRQGFCAGLKRSYFA 180
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: automated matches (71)

Protein domain: automated matches (71)

Human enterovirus 71 [TaxId: 39054] (7)

1a	d3r0fa_	A:
1b	d3r0fb_	B:

(no "CATH Domain" information available for 3R0F)

(no "Pfam Domain" information available for 3R0F)

Asymmetric Unit(hide GO term definitions)

Chain A,B (E7E815_9ENTO | E7E815)

molecular function
	GO:0004197	cysteine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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(no "Cis Peptide Bonds" information available for 3r0f)

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3osy	THIS IS THE APO STRUCTURE OF THE SAME PROTEIN

Description

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Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

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