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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN TFIIE COMPLEX
 
Authors :  T. Obita, K. Miwa, R. Kojima, Y. Ohkuma, Y. Tamura, M. Mizuguchi
Date :  05 Aug 16  (Deposition) - 02 Nov 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  General Transcription Factor, Rna Polymerase Ii, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Miwa, R. Kojima, T. Obita, Y. Ohkuma, Y. Tamura, M. Mizuguchi
Crystal Structure Of Human General Transcription Factor Tfiie At Atomic Resolution
J. Mol. Biol. V. 428 4258 2016
PubMed-ID: 27639436  |  Reference-DOI: 10.1016/J.JMB.2016.09.008

(-) Compounds

Molecule 1 - GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-217
    Gene: GTF2E1, TF2E1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GENERAL TRANSCRIPTION FACTOR IIE 56 KDA SUBUNIT, TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA,TFIIE-ALPHA
 
Molecule 2 - TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 141-244
    Gene: GTF2E2, TF2E2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TFIIE-BETA,GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:129 , CYS A:132 , CYS A:154 , CYS A:157binding site for residue ZN A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GPY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GPY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GPY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GPY)

(-) Exons   (0, 0)

(no "Exon" information available for 5GPY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeeee.....eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee......eehhhhhhh..................ee..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gpy A  10 VPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDTLLARFNEQIEPIYALLRETED 196
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159    || 179       189       
                                                                                                                                                                                    164|                     
                                                                                                                                                                                     175                     


Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh...eehhhhhhhh.hhhhhhhhh...eeeee.....eeeee.........hhhhhhhhhh......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5gpy B 142 KYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGI 242
                                   151       161       171       181       191       201       211       221       231       241
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GPY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GPY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GPY)

(-) Gene Ontology  (15, 25)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        T2EA_HUMAN | P29083: 1vd4 2jtx 2rnq 2rnr 5iy6 5iy7 5iy8 5iy9 5iya 5iyb 5iyc 5iyd
        T2EB_HUMAN | P29084: 1d8j 1d8k 5iy6 5iy7 5iy8 5iy9 5iya 5iyb 5iyc 5iyd

(-) Related Entries Specified in the PDB File

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