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(-) Description

Title :  SOLUTION STRUCTURE OF THE COMPLEX BETWEEN DP1 ACIDIC REGION AND TFIIH P62 PH DOMAIN
 
Authors :  M. Okuda, Y. Nishimura
Date :  29 Jul 16  (Deposition) - 07 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Transcription Factor, General Transcription Factor, Cell Cycle, Transcription Activation, Solution Structure, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Okuda, K. Araki, K. Ohtani, Y. Nishimura
The Interaction Mode Of The Acidic Region Of The Cell Cycle Transcription Factor Dp1 With Tfiih
J. Mol. Biol. V. 428 4993 2016
PubMed-ID: 27825926  |  Reference-DOI: 10.1016/J.JMB.2016.11.001

(-) Compounds

Molecule 1 - DP1
    Chains: A
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 2 - GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-108
    Gene: GTF2H1, BTF2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BASIC TRANSCRIPTION FACTOR 2 62 KDA SUBUNIT,BTF2 P62,GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1,TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX P62 SUBUNIT

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GOW)

(-) Sites  (0, 0)

(no "Site" information available for 5GOW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GOW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GOW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GOW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GOW)

(-) Exons   (0, 0)

(no "Exon" information available for 5GOW)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 5gow A 392 YVGEDDEEDDDFNENDEDD 410
                                   401         


Chain B from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeeee....eeeeeee..eeeee.......eeeeehhheeeeeee......eeeeeee...eeeeeee....hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 5gow B   1 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN 108
                                    10        20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GOW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GOW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GOW)

(-) Gene Ontology  (47, 53)

NMR Structure(hide GO term definitions)

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  5gow
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  TF2H1_HUMAN | P32780
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  TFDP1_HUMAN | Q14186
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TF2H1_HUMAN | P32780: 1pfj 2dii 2rnr 2ruk 2rvb
        TFDP1_HUMAN | Q14186: 2aze 5tuu 5tuv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5GOW)