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(-) Description

Title :  CRYSTAL STRUCTURE OF PDZ1 DOMAIN OF HUMAN PROTEIN TYROSINE PHOSPHATASE PTP-BAS
 
Authors :  S. O. Lee, B. Ku, S. W. Chi
Date :  11 Jul 16  (Deposition) - 23 Nov 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ptp-Bas, Pdz1 Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. O. Lee, M. K. Lee, B. Ku, K. H. Bae, S. C. Lee, H. M. Lim, S. J. Kim, S. W. Ch
High-Resolution Crystal Structure Of The Pdz1 Domain Of Human Protein Tyrosine Phosphatase Ptp-Bas.
Biochem. Biophys. Res. Commun. V. 478 1205 2016
PubMed-ID: 27544031  |  Reference-DOI: 10.1016/J.BBRC.2016.08.095

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
    Chains: A, B, C, D
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PDZ1 DOMAIN (UNP RESIDUES 1086-1178)
    Gene: PTPN13, PNP1, PTP1E, PTPL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FAS-ASSOCIATED PROTEIN-TYROSINE PHOSPHATASE 1,FAP-1,PTP-BAS, PROTEIN-TYROSINE PHOSPHATASE 1E,HPTPE1,PROTEIN-TYROSINE PHOSPHATASE PTPL1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:1126 , ARG B:1089 , ARG D:1116 , HOH D:1277binding site for residue CL A 1201
2AC2SOFTWARESER A:1125 , ALA A:1127 , HOH A:1397 , HOH D:1263binding site for residue CL A 1202
3AC3SOFTWAREARG A:1089 , SER B:1125 , VAL B:1126 , ARG C:1116binding site for residue CL C 1201
4AC4SOFTWAREARG A:1116 , ARG C:1089 , HOH C:1339 , HOH C:1416binding site for residue CL C 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GLJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GLJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GLJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GLJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5GLJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeeee........eeee............eeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                5glj A   -3 GHMSPEREITLVNLKKDAKYGLGFQIIGGEKMGRLDLGIFISSVAPGGPADLDGCLKPGDRLISVNSVSLEGVSHHAAIEILQNAPEDVTLVISQP 1178
                              ||  1092      1102      1112      1122      1132      1142      1152      1162      1172      
                             -1|                                                                                            
                            1086                                                                                            


Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee........eeee............eeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                5glj B 1086 SPEREITLVNLKKDAKYGLGFQIIGGEKMGRLDLGIFISSVAPGGPADLDGCLKPGDRLISVNSVSLEGVSHHAAIEILQNAPEDVTLVISQP 1178
                                  1095      1105      1115      1125      1135      1145      1155      1165      1175   


Chain C from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee........eeee............eeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                5glj C   -1 MSPEREITLVNLKKDAKYGLGFQIIGGEKMGRLDLGIFISSVAPGGPADLDGCLKPGDRLISVNSVSLEGVSHHAAIEILQNAPEDVTLVISQP 1178
                            ||    1094      1104      1114      1124      1134      1144      1154      1164      1174    
                           -1|                                                                                            
                          1086                                                                                            


Chain D from PDB  Type:PROTEIN  Length:96
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeeee........eeeee..........eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                5glj D   -3 GHMSPEREITLVNLKKDAKYGLGFQIIGGEKMGRLDLGIFISSVAPGGPADLDGCLKPGDRLISVNSVSLEGVSHHAAIEILQNAPEDVTLVISQP 1178
                              ||  1092      1102      1112      1122      1132      1142      1152      1162      1172      
                             -1|                                                                                            
                            1086
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GLJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GLJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GLJ)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        PTN13_HUMAN | Q12923: 1d5g 1q7x 1wch 2m0z 2m10 3lnx 3lny 3pdz

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