Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  SECOND PDZ DOMAIN FROM HUMAN PTP1E
 
Authors :  J. Zhang, A. Chang, H. Ke, G. N. Phillips Jr. , A. L. Lee, Center For Euk Structural Genomics (Cesg)
Date :  03 Feb 10  (Deposition) - 23 Feb 10  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Pdz2, Structural Genomics, Protein Structure Initiative, Psi-2, Center For Eukaryotic Structural Genomics, Cesg, Cytoskeleton, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhang, P. J. Sapienza, H. Ke, A. Chang, S. R. Hengel, H. Wang, G. N. Phillips, A. L. Lee
Crystallographic And Nuclear Magnetic Resonance Evaluation Of The Impact Of Peptide Binding To The Second Pdz Domain O Protein Tyrosine Phosphatase 1E.
Biochemistry V. 49 9280 2010
PubMed-ID: 20839809  |  Reference-DOI: 10.1021/BI101131F

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PDZ2 DOMAIN
    Gene: PTPN13, PNP1, PTP1E, PTPL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN-TYROSINE PHOSPHATASE 1E, PTP-E1, HPTPE1, PTP-BAS, PROTEIN-TYROSINE PHOSPHATASE PTPL1, FAS-ASSOCIATED PROTEIN-TYROSINE PHOSPHATASE 1, FAP-1

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 39)

Asymmetric/Biological Unit (2, 39)
No.NameCountTypeFull Name
1IOD25Ligand/IonIODIDE ION
2SCN14Ligand/IonTHIOCYANATE ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:18BINDING SITE FOR RESIDUE IOD A 97
02AC2SOFTWAREGLN F:83BINDING SITE FOR RESIDUE IOD A 98
03AC3SOFTWAREARG A:31 , HIS E:32BINDING SITE FOR RESIDUE IOD A 99
04AC4SOFTWAREASP B:15BINDING SITE FOR RESIDUE IOD A 100
05AC5SOFTWAREASN A:14 , SER A:48BINDING SITE FOR RESIDUE IOD A 101
06AC6SOFTWARELYS A:91BINDING SITE FOR RESIDUE IOD A 102
07AC7SOFTWAREALA A:60 , ASN A:62 , GLY A:63 , HIS A:86 , LEU A:88 , HOH A:165BINDING SITE FOR RESIDUE SCN A 103
08AC8SOFTWARELEU B:18BINDING SITE FOR RESIDUE IOD B 97
09AC9SOFTWAREGLN C:83BINDING SITE FOR RESIDUE IOD B 98
10BC1SOFTWARELYS B:91BINDING SITE FOR RESIDUE IOD B 100
11BC2SOFTWAREALA B:60 , ASN B:62 , GLY B:63 , HIS B:86 , LEU B:88 , HOH B:221BINDING SITE FOR RESIDUE SCN B 101
12BC3SOFTWAREARG A:57 , LEU A:59 , ARG B:57 , SCN B:103 , HOH B:116 , HOH B:224 , HOH B:270BINDING SITE FOR RESIDUE SCN B 102
13BC4SOFTWAREARG A:57 , GLU A:67 , HOH A:168 , ARG B:57 , LEU B:59 , SCN B:102BINDING SITE FOR RESIDUE SCN B 103
14BC5SOFTWAREVAL C:37BINDING SITE FOR RESIDUE IOD C 98
15BC6SOFTWAREALA C:39 , VAL C:40BINDING SITE FOR RESIDUE IOD C 99
16BC7SOFTWARELYS C:91BINDING SITE FOR RESIDUE IOD C 100
17BC8SOFTWAREALA C:60 , ASN C:62 , GLY C:63 , HIS C:86 , LEU C:88 , HOH C:477 , HOH C:493BINDING SITE FOR RESIDUE SCN C 101
18BC9SOFTWARESER C:21 , VAL C:22 , HIS C:71 , HOH C:111 , ASP D:15BINDING SITE FOR RESIDUE SCN C 102
19CC1SOFTWARELEU D:18BINDING SITE FOR RESIDUE IOD D 97
20CC2SOFTWAREASN B:14 , SER B:48BINDING SITE FOR RESIDUE IOD D 99
21CC3SOFTWARELYS D:91BINDING SITE FOR RESIDUE IOD D 100
22CC4SOFTWAREHOH D:148BINDING SITE FOR RESIDUE IOD D 101
23CC5SOFTWAREASN D:62 , GLY D:63 , HIS D:86 , LEU D:88 , HOH D:137BINDING SITE FOR RESIDUE SCN D 102
24CC6SOFTWAREHIS A:32 , ARG E:31BINDING SITE FOR RESIDUE IOD E 97
25CC7SOFTWARELEU E:18BINDING SITE FOR RESIDUE IOD E 98
26CC8SOFTWAREASN B:27 , THR E:23BINDING SITE FOR RESIDUE IOD E 99
27CC9SOFTWAREARG C:57 , ARG E:57 , LEU E:59 , HOH E:271BINDING SITE FOR RESIDUE SCN E 101
28DC1SOFTWAREASN E:62 , GLY E:63 , HIS E:86 , LEU E:88 , HOH E:578BINDING SITE FOR RESIDUE SCN E 102
29DC2SOFTWAREASN E:14 , SER E:48BINDING SITE FOR RESIDUE SCN E 103
30DC3SOFTWARELEU C:59 , ARG E:57 , GLU E:67 , HOH E:110 , HOH E:368BINDING SITE FOR RESIDUE SCN E 104
31DC4SOFTWARELEU F:18BINDING SITE FOR RESIDUE IOD F 97
32DC5SOFTWARELYS F:91BINDING SITE FOR RESIDUE IOD F 98
33DC6SOFTWAREASN F:62 , GLY F:63 , HIS F:86 , LEU F:88 , HOH F:114BINDING SITE FOR RESIDUE SCN F 100
34DC7SOFTWAREGLN A:83 , ASN F:14BINDING SITE FOR RESIDUE SCN F 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LNX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LNX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 6)

Asymmetric/Biological Unit (1, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_016200L1419PPTN13_HUMANPolymorphism749353184A/B/C/D/E/FL59P
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.PTN13_HUMAN1093-1179
1368-1453
 
 
 
 
 
1501-1589
1788-1869
1883-1966		  6-
A:8-93
B:8-93
C:8-93
D:8-93
E:8-93
F:8-93
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3LNX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
 aligned with PTN13_HUMAN | Q12923 from UniProtKB/Swiss-Prot  Length:2485

    Alignment length:94
                                  1370      1380      1390      1400      1410      1420      1430      1440      1450    
         PTN13_HUMAN   1361 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 1454
               SCOP domains d3lnxa_ A: Phosphatase hPTP1e                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.......eeeee.....hhhh.eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------P----------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: A:8-93 UniProt: 1368-1453                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                3lnx A    1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94
                                    10        20        30        40        50        60        70        80        90    


Chain B from PDB  Type:PROTEIN  Length:94
 aligned with PTN13_HUMAN | Q12923 from UniProtKB/Swiss-Prot  Length:2485

    Alignment length:94
                                  1370      1380      1390      1400      1410      1420      1430      1440      1450    
         PTN13_HUMAN   1361 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 1454
               SCOP domains d3lnxb_ B: Phosphatase hPTP1e                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.......eeeee..........eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------P----------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: B:8-93 UniProt: 1368-1453                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                3lnx B    1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94
                                    10        20        30        40        50        60        70        80        90    


Chain C from PDB  Type:PROTEIN  Length:94
 aligned with PTN13_HUMAN | Q12923 from UniProtKB/Swiss-Prot  Length:2485

    Alignment length:94
                                  1370      1380      1390      1400      1410      1420      1430      1440      1450    
         PTN13_HUMAN   1361 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 1454
               SCOP domains d3lnxc_ C: Phosphatase hPTP1e                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.......eeeee..........eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------P----------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: C:8-93 UniProt: 1368-1453                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                3lnx C    1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94
                                    10        20        30        40        50        60        70        80        90    


Chain D from PDB  Type:PROTEIN  Length:94
 aligned with PTN13_HUMAN | Q12923 from UniProtKB/Swiss-Prot  Length:2485

    Alignment length:94
                                  1370      1380      1390      1400      1410      1420      1430      1440      1450    
         PTN13_HUMAN   1361 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 1454
               SCOP domains d3lnxd_ D: Phosphatase hPTP1e                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.......eeeee.....hhhh.eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------P----------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: D:8-93 UniProt: 1368-1453                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                3lnx D    1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94
                                    10        20        30        40        50        60        70        80        90    


Chain E from PDB  Type:PROTEIN  Length:94
 aligned with PTN13_HUMAN | Q12923 from UniProtKB/Swiss-Prot  Length:2485

    Alignment length:94
                                  1370      1380      1390      1400      1410      1420      1430      1440      1450    
         PTN13_HUMAN   1361 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 1454
               SCOP domains d3lnxe_ E: Phosphatase hPTP1e                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.......eeeee.....hhhh.eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------P----------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: E:8-93 UniProt: 1368-1453                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                3lnx E    1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94
                                    10        20        30        40        50        60        70        80        90    


Chain F from PDB  Type:PROTEIN  Length:94
 aligned with PTN13_HUMAN | Q12923 from UniProtKB/Swiss-Prot  Length:2485

    Alignment length:94
                                  1370      1380      1390      1400      1410      1420      1430      1440      1450    
         PTN13_HUMAN   1361 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 1454
               SCOP domains d3lnxf_ F: Phosphatase hPTP1e                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------PDZ-3lnxF01 F:8-90                                                                 ---- Pfam domains (1)
           Pfam domains (2) -------PDZ-3lnxF02 F:8-90                                                                 ---- Pfam domains (2)
           Pfam domains (3) -------PDZ-3lnxF03 F:8-90                                                                 ---- Pfam domains (3)
           Pfam domains (4) -------PDZ-3lnxF04 F:8-90                                                                 ---- Pfam domains (4)
           Pfam domains (5) -------PDZ-3lnxF05 F:8-90                                                                 ---- Pfam domains (5)
           Pfam domains (6) -------PDZ-3lnxF06 F:8-90                                                                 ---- Pfam domains (6)
         Sec.struct. author .....eeeeeee.......eeeee.....hhhh.eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------P----------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: F:8-93 UniProt: 1368-1453                                                   - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                3lnx F    1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LNX)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: PDZ-like (184)
(-)
Family: PDZ (172)
(-)
Homo sapiens (Human) (96)
1aPDZ-3lnxF01F:8-90
1bPDZ-3lnxF02F:8-90
1cPDZ-3lnxF03F:8-90
1dPDZ-3lnxF04F:8-90
1ePDZ-3lnxF05F:8-90
1fPDZ-3lnxF06F:8-90

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (PTN13_HUMAN | Q12923)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
    GO:0036312    phosphatidylinositol 3-kinase regulatory subunit binding    Interacting selectively and non-covalently with a regulatory subunit of phosphatidylinositol 3-kinase. The regulatory subunit associates with the catalytic subunit to regulate both its activity and subcellular location.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004725    protein tyrosine phosphatase activity    Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0035335    peptidyl-tyrosine dephosphorylation    The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0014066    regulation of phosphatidylinositol 3-kinase signaling    Any process that modulates the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
cellular component
    GO:0044297    cell body    The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0030027    lamellipodium    A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    IOD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SCN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3lnx)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3lnx
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PTN13_HUMAN | Q12923
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PTN13_HUMAN | Q12923
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTN13_HUMAN | Q12923: 1d5g 1q7x 1wch 2m0z 2m10 3lny 3pdz 5glj

(-) Related Entries Specified in the PDB File

3lny