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(-) Description

Title :  UNVEILING THE MECHANISM BEHIND THE IN-MESO CRYSTALLIZATION OF MEMBRANE PROTEINS
 
Authors :  A. Zabara, J. Newman, T. S. Peat
Date :  07 Apr 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, Lyotropic Liquid Crystalline Systems, In Meso Crystallisation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Zabara, T. G. Meikle, J. Newman, T. S. Peat, C. E. Conn, C. J. Drummond
The Nanoscience Behind The Art Of In-Meso Crystallization Of Membrane Proteins.
Nanoscale V. 9 754 2017
PubMed-ID: 27976759  |  Reference-DOI: 10.1039/C6NR07634C

(-) Compounds

Molecule 1 - INTIMIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: MEMBRANE DOMAIN, UNP RESIDUES 197-438
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 1045010
    Other Details: MISSING N-TERMINAL DOMAIN
    Strain: O157

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
197M1Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-HEXADEC-9-ENOATE
297N3Ligand/Ion

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:274 , ILE A:278BINDING SITE FOR RESIDUE 97N A1450
2AC2SOFTWAREGLY A:292 , GLY A:293 , PHE A:308 , ARG A:309 , ASN A:328 , TYR A:354BINDING SITE FOR RESIDUE 97N A1451
3AC3SOFTWARELEU A:232 , ALA A:257 , MET A:405 , 97N A:1453BINDING SITE FOR RESIDUE 97M A1452
4AC4SOFTWARELEU A:217 , GLN A:218 , SER A:219 , ASP A:224 , GLY A:225 , ILE A:389 , 97M A:1452BINDING SITE FOR RESIDUE 97N A1453

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G26)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5G26)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G26)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G26)

(-) Exons   (0, 0)

(no "Exon" information available for 5G26)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeeeeeeeeee...eeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeee....ee.......eeee..eeeeeeeee......eeeeeeeeee.................eeeeeeeeeeee..eeeeeeeeee...eeeeeeeeeeeee....hhhhhhhhhhhhhh.................eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g26 A 209 HYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYK 449
                                   218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G26)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G26)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G26)

(-) Gene Ontology  (5, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EAE_ECO57 | P43261: 2zqk 2zwk 3ncw 3ncx 4e1s

(-) Related Entries Specified in the PDB File

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