4E1S - JenaLib

Title :   X-RAY CRYSTAL STRUCTURE OF THE TRANSMEMBRANE BETA-DOMAIN FROM INTIMIN FROM EHEC STRAIN O157:H7

Authors :   J. W. Fairman, N. Dautin, D. Wojtowicz, L. Wei, N. Noinaj, T. J. Barnard, A. Finkelstein, T. M. Przytycka, V. Cherezov, S. K. Buchanan

Date :   07 Mar 12 (Deposition) - 13 Jun 12 (Release) - 25 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A

Keywords :   Outer Membrane Beta Barrel, Adhesin, Translocated Intimin Receptor, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. Fairman, N. Dautin, D. Wojtowicz, W. Liu, N. Noinaj, T. J. Barnard E. Udho, T. M. Przytycka, V. Cherezov, S. K. Buchanan
Crystal Structures Of The Outer Membrane Domain Of Intimin And Invasin From Enterohemorrhagic E. Coli And Enteropathogenic Y. Pseudotuberculosis.
Structure V. 20 1233 2012
PubMed-ID: 22658748 | Reference-DOI: 10.1016/J.STR.2012.04.011

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 14)

Sites (14, 14)

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:333 , ASN A:335	BINDING SITE FOR RESIDUE CL A 501
02	AC2	SOFTWARE	GLN A:218 , SER A:219 , GLY A:225 , SER A:226 , TYR A:250 , VAL A:377 , TYR A:379 , ILE A:389 , OLC A:505 , OLC A:514	BINDING SITE FOR RESIDUE OLC A 502
03	AC3	SOFTWARE	GLY A:273 , GLY A:292 , GLY A:293 , VAL A:304 , ARG A:309 , ASN A:328 , TYR A:354 , OLC A:509 , HOH A:727	BINDING SITE FOR RESIDUE OLC A 503
04	AC4	SOFTWARE	TYR A:235 , GLN A:263 , TYR A:274 , OLC A:506 , OLC A:509 , OLC A:511 , OLC A:513	BINDING SITE FOR RESIDUE OLB A 504
05	AC5	SOFTWARE	VAL A:215 , SER A:226 , ALA A:248 , TYR A:379 , MET A:387 , OLC A:502 , OLB A:508 , OLC A:512 , OLC A:514	BINDING SITE FOR RESIDUE OLC A 505
06	AC6	SOFTWARE	PHE A:234 , TYR A:235 , LEU A:338 , PRO A:339 , SER A:340 , OLB A:504 , OLC A:511 , OLC A:513	BINDING SITE FOR RESIDUE OLC A 506
07	AC7	SOFTWARE	ARG A:297 , ASP A:298 , TYR A:299 , TYR A:337 , LEU A:338 , LEU A:344 , ALA A:346 , VAL A:377 , OLC A:512 , HOH A:753	BINDING SITE FOR RESIDUE OLC A 507
08	AC8	SOFTWARE	SER A:219 , GLY A:220 , ASN A:221 , TYR A:403 , TYR A:409 , OLC A:505 , HOH A:759	BINDING SITE FOR RESIDUE OLB A 508
09	AC9	SOFTWARE	ARG A:309 , MET A:310 , GLY A:312 , TRP A:313 , ARG A:325 , PHE A:330 , TYR A:354 , OLC A:503 , OLB A:504 , OLB A:510	BINDING SITE FOR RESIDUE OLC A 509
10	BC1	SOFTWARE	VAL A:304 , PHE A:330 , ILE A:332 , GLN A:352 , TYR A:354 , ASN A:369 , OLC A:509	BINDING SITE FOR RESIDUE OLB A 510
11	BC2	SOFTWARE	LEU A:232 , PRO A:233 , PHE A:234 , GLY A:244 , ALA A:261 , ILE A:278 , SER A:340 , TYR A:341 , LEU A:344 , OLB A:504 , OLC A:506 , HOH A:698	BINDING SITE FOR RESIDUE OLC A 511
12	BC3	SOFTWARE	TYR A:341 , VAL A:377 , OLC A:505 , OLC A:507 , OLC A:514	BINDING SITE FOR RESIDUE OLC A 512
13	BC4	SOFTWARE	TYR A:235 , SER A:237 , MET A:240 , GLN A:263 , LEU A:267 , LEU A:272 , TYR A:274 , OLB A:504 , OLC A:506 , HOH A:730	BINDING SITE FOR RESIDUE OLC A 513
14	BC5	SOFTWARE	HIS A:209 , PHE A:230 , ALA A:257 , OLC A:502 , OLC A:505 , OLC A:512 , HOH A:759	BINDING SITE FOR RESIDUE OLC A 514

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:242
 aligned with EAE_ECO57 | P43261 from UniProtKB/Swiss-Prot  Length:934

    Alignment length:242
                                   217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447  
            EAE_ECO57   208 QHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYK 449
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....eeeeeeeeeeee...eeeeeeeeeeee..eeeeeeeeeeeee....eeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeee....ee.......eeee..eeeeeeeeee..eeeeeeeeeeeee.................eeeeeeeeeeee..eeeeeeeeee...eeeeeeeeeeeee...hhhhhh..hhhhhhhh................eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e1s A 208 QHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYK 449
                                   217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (EAE_ECO57 | P43261)

biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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