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(-) Description

Title :  HUMAN CHOLINE KINASE A1 IN COMPLEX WITH COMPOUND 4-(DIMETHYLAMINO)-1-{4-[4-(4-{[4-(PYRROLIDIN-1-YL)PYRIDINIUM-1-YL]METHYL}PHENYL)BUTYL]BENZYL}PYRIDINIUM (COMPOUND BR25)
 
Authors :  L. Serran-Aguilera, H. Denton, B. Rubio-Ruiz, B. Lopez-Gutierrez, A. L. Izquierdo, T. K. Smith, A. Conejo-Garcia, R. Hurtado-Guerrero
Date :  29 Jan 16  (Deposition) - 21 Sep 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Choline Kinase, Phosphatidyletanolamine, Inhibitors (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Serran-Aguilera, H. Denton, B. Rubio-Ruiz, B. Lopez-Gutierrez, A. Entrena, L. Izquierdo, T. K. Smith, A. Conejo-Garcia, R. Hurtado-Guerrero
Plasmodium Falciparum Choline Kinase Inhibition Leads To A Major Decrease In Phosphatidylethanolamine Causing Parasite Death.
Sci. Rep. V. 6 33189 2016
PubMed-ID: 27616047  |  Reference-DOI: 10.1038/SREP33189

(-) Compounds

Molecule 1 - CHOLINE KINASE ALPHA
    Chains: A
    EC Number: 2.7.1.32, 2.7.1.82
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMALC2X
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-457
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2PQ71Ligand/Ion4-(DIMETHYLAMINO)-1-{4-[4-(4-{[4-(PYRROLIDIN-1-YL)PYRIDINIUM-1-YL]METHYL}PHENYL)BUTYL]BENZYL}PYRIDINIUM

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:100 , LYS A:239 , LYS A:244 , HOH A:2090 , HOH A:2211 , HOH A:2275BINDING SITE FOR RESIDUE EDO A1458
02AC2SOFTWARELEU A:93 , PHE A:449 , HIS A:450 , ARG A:453BINDING SITE FOR RESIDUE EDO A1459
03AC3SOFTWARELEU A:144 , GLN A:207 , PHE A:208 , ILE A:209 , ARG A:213BINDING SITE FOR RESIDUE EDO A1460
04AC4SOFTWARETYR A:352 , ALA A:364 , ALA A:443 , ASP A:446 , ALA A:447 , HOH A:2271 , HOH A:2277BINDING SITE FOR RESIDUE EDO A1461
05AC5SOFTWAREARG A:270 , ALA A:428 , PHE A:435 , TYR A:437 , MET A:438 , HOH A:2260 , HOH A:2265BINDING SITE FOR RESIDUE EDO A1462
06AC6SOFTWAREGLU A:218 , LEU A:221 , GLU A:319 , LYS A:325 , HOH A:2118BINDING SITE FOR RESIDUE EDO A1463
07AC7SOFTWAREASN A:281 , LEU A:284 , LEU A:376 , SER A:380 , LYS A:402 , HOH A:2236 , HOH A:2241BINDING SITE FOR RESIDUE EDO A1464
08AC8SOFTWAREARG A:339 , GLN A:387 , HOH A:2254BINDING SITE FOR RESIDUE EDO A1465
09AC9SOFTWAREMET A:177 , VAL A:178 , PHE A:200 , PRO A:201 , HOH A:2057BINDING SITE FOR RESIDUE EDO A1466
10BC1SOFTWAREASN A:305 , ASP A:306 , GLN A:308 , TYR A:333 , TYR A:354 , TRP A:420 , TRP A:423 , ILE A:433 , PHE A:435 , TYR A:437 , TYR A:440BINDING SITE FOR RESIDUE PQ7 A1467

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FUT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:359 -Pro A:360

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FUT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FUT)

(-) Exons   (0, 0)

(no "Exon" information available for 5FUT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh..hhhhheeeeee.....eeeeee.............eeeeee..hhhhhhhhhhhhhhhhhh.....eeeee..eeeee...eee.hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh....eeee....hhh.eeee..........eee......eeeehhhhhhhhhhhh.ee.........ee.hhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fut A  80 DEQPEPRTRRRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKLGV 457
                                    89        99       109       119       129       139       149|      182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452     
                                                                                               149|                                                                                                                                                                                                                                                                                            
                                                                                                173
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FUT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FUT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FUT)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:359 - Pro A:360   [ RasMol ]  
 

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  5fut
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHKA_HUMAN | P35790: 2cko 2ckp 2ckq 2i7q 3f2r 3g15 3zm9 4br3 4cg8 4cg9 4cga 4da5 5afv 5eqe 5eqp 5eqy 5ftg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FUT)