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(-) Description

Title :  HUMAN CHOLINE KINASE A1 IN COMPLEX WITH COMPOUND 1-[[4-[2-[4-[[4-(DIMETHYLAMINO)PYRIDIN-1-YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N,N-DIMETHYL-PYRIDIN-4-AMINE (COMPOUND 10A)
 
Authors :  S. Schiaffino-Ortega, E. Baglioni, E. Mariotto, R. Bortolozzi, L. Serran-Aguilera, P. Rios-Marco, M. P. Carrasco-Jimenez, M. A. Gal R. Hurtado-Guerrero, C. Marco, G. Basso, G. Viola, A. Entrena, L. C. Lo
Date :  13 Jan 16  (Deposition) - 23 Mar 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Biscationic Inhibitor, Docking Studies (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Schiaffino-Ortega, E. Baglioni, E. Mariotto, R. Bortolozzi, L. Serran-Aguilera, P. Rios-Marco, M. P. Carrasco-Jimenez, M. A. Gallo, R. Hurtado-Guerrero, C. Marco, G. Basso, G. Viola, A. Entrena, L. C. Lopez-Cara
Design, Synthesis, Crystallization And Biological Evaluation Of New Symmetrical Biscationic Compounds As Selective Inhibitors Of Human Choline Kinase Alpha1 (Chokalpha1)
Sci. Rep. V. 6 23793 2016
PubMed-ID: 27029499  |  Reference-DOI: 10.1038/SREP23793

(-) Compounds

Molecule 1 - CHOLINE KINASE ALPHA
    Chains: A
    EC Number: 2.7.1.32, 2.7.1.82
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMALC2X
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-457
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CK, CHETK-ALPHA, ETHANOLAMINE KINASE, EK

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2NBR1Ligand/Ion1-[[4-[2-[4-[[4-(DIMETHYLAMINO)PYRIDIN-1-YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N,N-DIMETHYL-PYRIDIN-4-AMINE
Biological Unit 1 (2, 22)
No.NameCountTypeFull Name
1EDO20Ligand/Ion1,2-ETHANEDIOL
2NBR2Ligand/Ion1-[[4-[2-[4-[[4-(DIMETHYLAMINO)PYRIDIN-1-YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N,N-DIMETHYL-PYRIDIN-4-AMINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:305 , ASP A:306 , GLN A:308 , TYR A:333 , GLU A:349 , TYR A:354 , GLU A:357 , PHE A:361 , TRP A:420 , TRP A:423 , GLU A:434 , PHE A:435 , TYR A:440 , EDO A:1466BINDING SITE FOR RESIDUE NBR A1458
02AC2SOFTWARETHR A:216 , GLU A:217 , LEU A:219 , SER A:220 , TRP A:350BINDING SITE FOR RESIDUE EDO A1459
03AC3SOFTWARETYR A:369 , GLN A:374BINDING SITE FOR RESIDUE EDO A1460
04AC4SOFTWARETRP A:350 , MET A:351 , ARG A:363 , HOH A:2225 , HOH A:2238BINDING SITE FOR RESIDUE EDO A1461
05AC5SOFTWAREARG A:89 , LEU A:93 , PHE A:449 , LYS A:452 , ARG A:453BINDING SITE FOR RESIDUE EDO A1462
06AC6SOFTWAREASP A:80 , HIS A:112 , SER A:114 , GLN A:126 , SER A:128BINDING SITE FOR RESIDUE EDO A1463
07AC7SOFTWAREGLU A:175 , LEU A:179 , PRO A:201BINDING SITE FOR RESIDUE EDO A1464
08AC8SOFTWARELEU A:293 , GLU A:294 , THR A:296 , SER A:298 , TYR A:338 , PHE A:412 , HOH A:2193BINDING SITE FOR RESIDUE EDO A1465
09AC9SOFTWAREASP A:306 , GLN A:308 , TRP A:423 , NBR A:1458 , HOH A:2221BINDING SITE FOR RESIDUE EDO A1466
10BC1SOFTWARETYR A:352 , ALA A:443 , ASP A:446 , ALA A:447 , HOH A:2287 , HOH A:2290BINDING SITE FOR RESIDUE EDO A1467
11BC2SOFTWAREMET A:351 , TYR A:369 , HIS A:417 , ALA A:447 , HIS A:450 , GLN A:451BINDING SITE FOR RESIDUE EDO A1468

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FTG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr A:359 -Pro A:360

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FTG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FTG)

(-) Exons   (0, 0)

(no "Exon" information available for 5FTG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:353
                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee.....eeeeee.............eeeeee..hhhhhhhhhhhhhhhh.....eeeee..eeeee...eee.hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhh....eeee....hhh.eeee..........eee......eeeehhhhhhhhhhhh.ee.........ee.hhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ftg A  80 DEQPEPRTRRRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKLGV 457
                                    89        99       109       119       129       139       149|      184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454   
                                                                                               149|                                                                                                                                                                                                                                                                                          
                                                                                                175
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FTG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FTG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FTG)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHKA_HUMAN | P35790: 2cko 2ckp 2ckq 2i7q 3f2r 3g15 3zm9 4br3 4cg8 4cg9 4cga 4da5 5afv 5eqe 5eqp 5eqy 5fut

(-) Related Entries Specified in the PDB File

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