5FQ4 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE LIPOPROTEIN BT2263 FROM BACTEROIDES THETAIOTAOMICRON

Authors :   A. J. Glenwright, K. R. Pothula, D. S. Chorev, A. Basle, C. V. Robinson, U. Kleinekathoefer, D. N. Bolam, B. Van Den Berg

Date :   04 Dec 15 (Deposition) - 14 Dec 16 (Release) - 01 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Membrane Protein, Outer Membrane Lipoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. J. Glenwright, K. R. Pothula, S. P. Bhamidimarri, D. S. Chorev, A. Basle, S. J. Firbank, H. Zheng, C. V. Robinson, M. Winterhalter, U. Kleinekathofer, D. N. Bolam, B. Van Den Berg
Structural Basis For Nutrient Acquisition By Dominant Members Of The Human Gut Microbiota.
Nature V. 541 407 2017
PubMed-ID: 28077872 | Reference-DOI: 10.1038/NATURE20828

Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET9B
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 20-498
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	818
	Other Details	:	N-TERMINAL CYSTEINE RESIDUE REMOVED
	Synonym	:	BT_2263

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 2)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:408 , ASP A:411 , ASP A:478 , LYS A:480 , HOH A:2373 , HOH A:2374	BINDING SITE FOR RESIDUE CA A 501
2	AC2	SOFTWARE	ARG B:408 , ASP B:411 , ASP B:478 , LYS B:480 , HOH B:2352 , HOH B:2353	BINDING SITE FOR RESIDUE CA B 501

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee......hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh......eee..........hhhhhhhhh.....eeehhhhhhhhhhh.hhhhhh.................hhhhhhhhhhhhhhhhhhh...hhhhh....eeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhh........................hhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq4 A  18 TADLIFPSISASIASAVGGEIYNYAGFFAQYYEQKPESNQYNTLCEYTFTESSQQMDYSYRILFAGALEDAKQVLEKTTNPADRFATTILRAYAFQIMVDNTSDSPYSEALATPKWDTGETVYKGILGEIDAAEAALDGSGMDVPDLIFNKNIAQWKGFANALRLRMYLRFIDANIDAASYTEKVKTLVQNNEFFTGDVKLDCFLDETDKRNPWYNTNAVGLTGNHCAAYPLVSYLSSTGDPRIAYGISKTDADGKYVGQLPGGKTHMQSILGTDNWKNKNVSAIDYSIGATKPVYFFTQAELQFLIAEVYARFHNDDANAKSAYEAGVTADFAVRGFAGQENTILEGACAWSAASTQADKLNLIYMQKWVSLFYMDHMEAWSEIRRTDCPKLSSYSAAQIQASESVYTPGELVAPWTNGLEAGGLMKRMTYPLSARQQNVNTPAGVPGSTPVWWDIK 480
                                    27        37        47        57        67        77        87        97       107       117       127||     142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472        
                                                                                                                                        128|                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                         134

Chain B from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee......hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.ee.....hhhhhh...eehhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh......eee..........hhhhhhhh......eeehhhhhhhhhhh.hhhhhh.................hhhhhhhhhhhhhhhhhhh...hhhhh....eeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhh........................hhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq4 B  18 TADLIFPSISASIASAVGGEIYNYAGFFAQYYEQKPESNQYNTLCEYTFTESSQQMDYSYRILFAGALEDAKQVLEKTTNPADRFATTILRAYAFQIMVDNTSDSPYSEALQGNANATPKWDTGETVYKGILGEIDAAEAALDGSGMDVPDLIFNKNIAQWKGFANALRLRMYLRFIDANIDAASYTEKVKTLVQNNEFFTGDVKLDCFLDETDKRNPWYNTNAVGLTGNHCAAYPLVSYLSSTGDPRIAYGISKTDADGKYVGQLPGGKTHMQSILGTDNWKNKNVSAIDYSIGATKPVYFFTQAELQFLIAEVYARFHNDDANAKSAYEAGVTADFAVRGFAGQENTILEGACAWSAASTQADKLNLIYMQKWVSLFYMDHMEAWSEIRRTDCPKLSSYSAAQIQASESVYTPGELVAPWTNGLEAGGLMKRMTYPLSARQQNVNTPAGVPGSTPVWWDIK 480
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Cis Peptide Bonds
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

5fq3	CRYSTAL STRUCTURE OF THE LIPOPROTEIN BT2262 FROM BACTEROIDES THETAIOTAOMICRON
5fq6	CRYSTAL STRUCTURE OF THE SUSCD COMPLEX BT2261-2264 FROM BACTEROIDES THETAIOTAOMICRON
5fq7	CRYSTAL STRUCTURE OF THE SUSCD COMPLEX BT2261-2264 FROM BACTEROIDES THETAIOTAOMICRON
5fq8	CRYSTAL STRUCTURE OF THE SUSCD COMPLEX BT2261-2264 FROM BACTEROIDES THETAIOTAOMICRON

Description