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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LIPOPROTEIN BT2262 FROM BACTEROIDES THETAIOTAOMICRON
 
Authors :  A. J. Glenwright, K. R. Pothula, D. S. Chorev, A. Basle, C. V. Robinson, U. Kleinekathoefer, D. N. Bolam, B. Van Den Berg
Date :  04 Dec 15  (Deposition) - 14 Dec 16  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Membrane Protein, Outer Membrane Lipoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Glenwright, K. R. Pothula, S. P. Bhamidimarri, D. S. Chorev, A. Basle, S. J. Firbank, H. Zheng, C. V. Robinson, M. Winterhalter, U. Kleinekathofer, D. N. Bolam, B. Van Den Berg
Structural Basis For Nutrient Acquisition By Dominant Members Of The Human Gut Microbiota.
Nature V. 541 407 2017
PubMed-ID: 28077872  |  Reference-DOI: 10.1038/NATURE20828

(-) Compounds

Molecule 1 - BT_2262
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET9B
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 20-230
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818
    Other Details: N-TERMINAL CYSTEINE RESIDUE REMOVED

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FQ3)

(-) Sites  (0, 0)

(no "Site" information available for 5FQ3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FQ3)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ser A:97 -Gly A:98
2Ala A:110 -Pro A:111
3Ser B:97 -Gly B:98
4Ala B:110 -Pro B:111
5Gly B:176 -Asp B:177
6Asp B:188 -Pro B:189
7Ala B:190 -Thr B:191
8Thr B:191 -Gly B:192
9Ser C:97 -Gly C:98
10Ala C:110 -Pro C:111
11Gly C:176 -Asp C:177
12Ser D:97 -Gly D:98
13Ala D:110 -Pro D:111
14Gly D:176 -Asp D:177
15Asp D:188 -Pro D:189
16Thr D:191 -Gly D:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FQ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FQ3)

(-) Exons   (0, 0)

(no "Exon" information available for 5FQ3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeee..........eeeee..ee.hhhheee........eeeeeeeeee.....eeeeeeeeee..........eeeee....eeee...ee....eeeeeeee..eeee....................eeeeee.....eeeeeee.........eeeeeeee....eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq3 A  14 FVTLEREGDEKIVLEKGQPFVEPGYYAEMNGEDITESVQIKGSVDVNTPGIYNLVYAAYNEDGFAKTFTRTVYVADNTASPLKSGIYTVAEGSKRTAPSVVAFSGYEIVIFQMEPGIFYISDFLGGWYDQRAGYGPDYAMVGKFELNDDNTITPLESYVAGWGDSMDQMTNTLLDPATGTLKWTVAYAGQLSFDIIVKQ 212
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203         


Chain B from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeeee.........eeeee..ee.hhhheee........eeeeeeeeee....eeeeeeeeeeee.........eeeee....eeee...ee....eeeeee....eeee.....................eeeee.....eee.............eeeeeee......eeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq3 B  14 FVTLEREGDEKIVLEKGQPFVEPGYYAEMNGEDITESVQIKGSVDVNTPGIYNLVYAAYNEDGFAKTFTRTVYVADNTASPLKSGIYTVAEGSKRTAPSVVAFSGYEIVIFQMEPGIFYISDFLGGWYDQRAGYGPDYAMVGKFELNDDNTITPLESYVAGWGDSMDQMTNTLLDPATGTLKWTVAYAGQLSFDIIVKQ 212
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203         


Chain C from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeeee.........eeeee..ee.hhhheee........eeeeeeeeee....eeeeeeeeeeee..........eeee....eeee...ee....eeeeeeee..eeee.....hhhhhhh........eeeeee.....eeeeeee.........eeeeeeee....eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq3 C  14 FVTLEREGDEKIVLEKGQPFVEPGYYAEMNGEDITESVQIKGSVDVNTPGIYNLVYAAYNEDGFAKTFTRTVYVADNTASPLKSGIYTVAEGSKRTAPSVVAFSGYEIVIFQMEPGIFYISDFLGGWYDQRAGYGPDYAMVGKFELNDDNTITPLESYVAGWGDSMDQMTNTLLDPATGTLKWTVAYAGQLSFDIIVKQ 212
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203         


Chain D from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeeee.........eeeee..ee.hhhheee........eeeeeeeeee....eeeeeeeeeeee............ee....eeee............eeeee..eeee....................eeeeee.....eeeeeee.........eeeeeee......eeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq3 D  14 FVTLEREGDEKIVLEKGQPFVEPGYYAEMNGEDITESVQIKGSVDVNTPGIYNLVYAAYNEDGFAKTFTRTVYVADNTASPLKSGIYTVAEGSKRTAPSVVAFSGYEIVIFQMEPGIFYISDFLGGWYDQRAGYGPDYAMVGKFELNDDNTITPLESYVAGWGDSMDQMTNTLLDPATGTLKWTVAYAGQLSFDIIVKQ 212
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FQ3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FQ3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FQ3)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5FQ3)

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  Cis Peptide Bonds
    Ala A:110 - Pro A:111   [ RasMol ]  
    Ala B:110 - Pro B:111   [ RasMol ]  
    Ala B:190 - Thr B:191   [ RasMol ]  
    Ala C:110 - Pro C:111   [ RasMol ]  
    Ala D:110 - Pro D:111   [ RasMol ]  
    Asp B:188 - Pro B:189   [ RasMol ]  
    Asp D:188 - Pro D:189   [ RasMol ]  
    Gly B:176 - Asp B:177   [ RasMol ]  
    Gly C:176 - Asp C:177   [ RasMol ]  
    Gly D:176 - Asp D:177   [ RasMol ]  
    Ser A:97 - Gly A:98   [ RasMol ]  
    Ser B:97 - Gly B:98   [ RasMol ]  
    Ser C:97 - Gly C:98   [ RasMol ]  
    Ser D:97 - Gly D:98   [ RasMol ]  
    Thr B:191 - Gly B:192   [ RasMol ]  
    Thr D:191 - Gly D:192   [ RasMol ]  
 
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 Related Entries

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        Q8A5H7_BACTN | Q8A5H7: 5fq7 5fq8

(-) Related Entries Specified in the PDB File

5fq4 CRYSTAL STRUCTURE OF THE LIPOPROTEIN BT2263 FROM BACTEROIDES THETAIOTAOMICRON
5fq6 CRYSTAL STRUCTURE OF THE SUSCD COMPLEX BT2261-2264 FROM BACTEROIDES THETAIOTAOMICRON
5fq7 CRYSTAL STRUCTURE OF THE SUSCD COMPLEX BT2261-2264 FROM BACTEROIDES THETAIOTAOMICRON
5fq8 CRYSTAL STRUCTURE OF THE SUSCD COMPLEX BT2261-2264 FROM BACTEROIDES THETAIOTAOMICRON