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(-) Description

Title :  F206W MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES
 
Authors :  M. Martinez-Julvez, B. Herguedas, M. Milagros
Date :  17 Nov 15  (Deposition) - 30 Nov 16  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Transferase, Riboflavin Kinase, Nucleotide-Binding, Atp- Binding, Multifunctional Enzyme, Nucleotidyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Serrano, M. Sebastian, S. Arilla-Luna, S. Baquedano, B. Herguedas A. Velazquez-Campoy, M. Martinez-Julvez, M. Medina
The Trimer Interface In The Quaternary Structure Of The Bifunctional Prokaryotic Fad Synthetase From Corynebacteriu Ammoniagenes.
Sci Rep V. 7 404 2017
PubMed-ID: 28341845  |  Reference-DOI: 10.1038/S41598-017-00402-6

(-) Compounds

Molecule 1 - RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF
    Chains: A, B
    EC Number: 2.7.1.26, 2.7.7.2, 2.7.1.26, 2.7.7.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: CORYNEBACTERIUM AMMONIAGENES
    Organism Taxid: 1697
    Synonym: FLAVOKINASE, FAD PYROPHOSPHORYLASE, FAD SYNTHASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1PPV2Ligand/IonPYROPHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1PPV6Ligand/IonPYROPHOSPHATE
2SO46Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:73 , LEU A:74 , HOH A:2013 , ARG B:195 , TYR B:279 , HOH B:2031BINDING SITE FOR RESIDUE SO4 B 1339
2AC2SOFTWAREGLY A:22 , VAL A:23 , PHE A:24 , HIS A:28 , HIS A:31 , ASN A:125 , SER A:163 , SER A:164 , HOH A:2027BINDING SITE FOR RESIDUE PPV A 1339
3AC3SOFTWAREARG A:195 , TYR A:279 , THR B:73 , LEU B:74BINDING SITE FOR RESIDUE SO4 A 1340
4AC4SOFTWAREGLY B:22 , VAL B:23 , PHE B:24 , HIS B:28 , HIS B:31 , ASN B:125 , SER B:163 , SER B:164 , HOH B:2003BINDING SITE FOR RESIDUE PPV B 1340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FNZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:55 -Pro A:56
2Asp B:55 -Pro B:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FNZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FNZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5FNZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhh......eeeee......hhhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhh.........hhhhhhhhhhhh...eeeee.........hhhhhhhhhh.....eeeeeee.....hhhhh.hhhhhhhhh....eeeee...ee..ee.hhhhhhhhhhh.hhhhhhhhhh...eeeee...........eeeee.........eeeeeeeee.......ee......eeeeeeeeee...eeeeeee....ee....eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnz A   1 MDIWYGTAAVPKDLDNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSEGDVARANWALGRHFYVTGPVVRGAGRGWPTANQYFHDTVALPADGVYAGWLTILPTEAPVSGNMEPEVAYAAAISVGTNPQRSVESFVLDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLAQDVQAHKMAPETYFLQAES 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       205       215       225       235       245       255  ||   270       280       290       300       310       320       330        
                                                                                                                                                                                                                                199|                                                  258|                                                                          
                                                                                                                                                                                                                                 205                                                   264                                                                          


Chain B from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhh......eeeee......hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhh.........hhhhhhhhhhhh...eeeee.........hhhhhhhhhh.....eeeeeee.....hhhhh.hhhhhhhhh....eeeee...ee..ee.hhhhhhhhhhh.hhhhhhhhhh..eeeeee..............eeeee.........eeeeeeeee.......ee......eeeeeeeeee.....eeeeeee....ee....eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnz B   1 MDIWYGTAAVPKDLDNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSEGDVARANWALGRHFYVTGPVVRGAGRGELGWPTANQYFHDTVALPADGVYAGWLTILPTEAPVSGNMEPEVAYAAAISVGTNPTFQRSVESFVLDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLAQDVQAHKMAPETYFLQAES 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200|      212       222       232       242       252       265       275       285       295       305       315       325       335   
                                                                                                                                                                                                                                 200|                                                      260|                                                                          
                                                                                                                                                                                                                                  203                                                       264
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FNZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FNZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FNZ)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)

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    Asp A:55 - Pro A:56   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIBF_CORAM | Q59263: 2x0k 3zug 4uze 4uzf 5a88 5a89 5a8a 5fo0 5fo1

(-) Related Entries Specified in the PDB File

5fo0 D298E MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES
5fo1 E301A MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES