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(-) Description

Title :  R66E MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES
 
Authors :  M. Martinez-Julvez, B. Herguedas, M. Milagros
Date :  05 Sep 14  (Deposition) - 08 Apr 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Transferase, Riboflavin Kinase, Nucleotide-Binding, Atp- Binding, Multifunctional Enzyme, Nucleotidyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Serrano, M. Sebastian, S. Arilla-Luna, S. Baquedano, M. C. Pallares, A. Lostao, B. Herguedas, A. Velazquez-Campoy, M. Martinez-Julvez, M. Medina
Quaternary Organization In A Bifunctional Prokaryotic Fad Synthetase: Involvement Of An Arginine At Its Adenylyltransferase Module On The Riboflavin Kinase Activity.
Biochim. Biophys. Acta V. 1854 897 2015
PubMed-ID: 25801930  |  Reference-DOI: 10.1016/J.BBAPAP.2015.03.005

(-) Compounds

Molecule 1 - RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF
    Chains: A, B
    EC Number: 2.7.1.26, 2.7.7.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: CORYNEBACTERIUM AMMONIAGENES
    Organism Taxid: 1697

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1PPV2Ligand/IonPYROPHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1PPV6Ligand/IonPYROPHOSPHATE
2SO46Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:1022 , VAL B:1023 , PHE B:1024 , HIS B:1028 , HIS B:1031 , ASN B:1125 , SER B:1163 , SER B:1164 , HOH B:2006BINDING SITE FOR RESIDUE PPV B2339
2AC2SOFTWAREGLY A:22 , VAL A:23 , PHE A:24 , HIS A:28 , HIS A:31 , ASN A:125 , SER A:163 , SER A:164 , HOH A:2009 , HOH A:2045BINDING SITE FOR RESIDUE PPV A1339
3AC3SOFTWARETYR A:279 , HOH A:2056 , THR B:1073 , LEU B:1074BINDING SITE FOR RESIDUE SO4 B2340
4AC4SOFTWARETHR A:73 , LEU A:74 , ARG B:1195 , TYR B:1279BINDING SITE FOR RESIDUE SO4 A1340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UZF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:55 -Pro A:56
2Asp B:1055 -Pro B:1056

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UZF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UZF)

(-) Exons   (0, 0)

(no "Exon" information available for 4UZF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhh......eeeee......hhhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhh.........hhhhhhhhhhhh...eeeee.........hhhhhhhhhh.....eeeeeee...eehhhhheehhhhhhhhh...eeeee...ee..ee.hhhhhhhhhhh.hhhhhhhhhh...eeeee................eeeee.........eeeeeeeee.......ee......eeeeeeeeee....eeeeeee....ee....eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uzf A    1 MDIWYGTAAVPKDLDNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPREAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSEGDVARANWALGRHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPADGVYAGWLTILPTEAPVSGNMEPEVAYAAAISVGTNPEQRSVESFVLDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLAQDVQAHKMAPETYFLQAES  338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       264       274       284       294       304       314       324       334    
                                                                                                                                                                                                                                                                                           258|                                                                           
                                                                                                                                                                                                                                                                                            263                                                                           


Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhh......eeeee......hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhh.........hhhhhhhhhhhh...eeeee.........hhhhhhhhhh.....eeeeeee.....hhhhh.hhhhhhhhh....eeeee..eee..eeehhhhhhhhhhh.hhhhhhhhhh..eeeeee................eeeee.........eeeeeeeee.......ee......eeeeeeeeee.....eeeeeee....ee....eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uzf B 1001 MDIWYGTAAVPKDLDNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPREAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSEGDVARANWALGRHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPADGVYAGWLTILPTEAPVSGNMEPEVAYAAAISVGTNPTEQRSVESFVLDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLAQDVQAHKMAPETYFLQAES 1338
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1263      1273      1283      1293      1303      1313      1323      1333     
                                                                                                                                                                                                                                                                                           1259|                                                                           
                                                                                                                                                                                                                                                                                            1263
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UZF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UZF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UZF)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIBF_CORAM | Q59263: 2x0k 3zug 4uze 5a88 5a89 5a8a 5fnz 5fo0 5fo1

(-) Related Entries Specified in the PDB File

4uze R66A MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES