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(-) Description

Title :  CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII TRIPLE MUTANT E37K, H39R & G330R
 
Authors :  F. J. Medrano, A. Romero
Date :  13 Nov 15  (Deposition) - 13 Jul 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Class Ii (Fungal) Peroxidases, Protoporphyrin Ix, Electron T Lignin Peroxidase, Lignin Degradation, Manganese Peroxidase, Independent Oxidation Phenolic Non-Phenolic Aromatics, Mnii Oxidation, Peroxidase, Polyvalent Peroxidase, Oxidoreductas Hydrogen Peroxide, Iron, Manganese, Metal-Binding, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Saez-Jimenez, S. Acebes, E. Garcia-Ruiz, A. Romero, V. Guallar, M. Alcalde, F. J. Medrano, A. T. Martinez, F. J. Ruiz-Duenas
Unveiling The Basis Of Alkaline Stability Of An Evolved Versatile Peroxidase.
Biochem. J. V. 473 1917 2016
PubMed-ID: 27118867  |  Reference-DOI: 10.1042/BCJ20160248

(-) Compounds

Molecule 1 - VERSATILE PEROXIDASE
    Chains: A
    EC Number: 1.11.1.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: W3110
    Expression System Taxid: 316407
    Fragment: RESIDUES 31-361
    Mutation: YES
    Organism Common: BOLETUS OF THE STEPPES
    Organism Scientific: PLEUROTUS ERYNGII
    Organism Taxid: 5323
    Strain: IJFM, A169

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO410Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:48 , GLY A:60 , ASP A:62 , SER A:64 , HOH A:2079 , HOH A:2089BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWARESER A:170 , ASP A:187 , THR A:189 , VAL A:192 , ASP A:194BINDING SITE FOR RESIDUE CA A 402
03AC3SOFTWAREARG A:39 , GLU A:40 , LEU A:42 , ARG A:43 , PHE A:46 , GLU A:140 , PRO A:141 , LEU A:166 , SER A:168 , HIS A:169 , ALA A:172 , ALA A:173 , ALA A:174 , ASP A:175 , LYS A:176 , VAL A:177 , PHE A:186 , LEU A:228 , SER A:230 , HOH A:2066 , HOH A:2069 , HOH A:2074 , HOH A:2081 , HOH A:2362BINDING SITE FOR RESIDUE HEM A 500
04AC4SOFTWARESER A:86 , LYS A:89 , HOH A:2112 , HOH A:2133BINDING SITE FOR RESIDUE SO4 A1330
05AC5SOFTWAREPHE A:142 , LYS A:215 , GLY A:216 , GLN A:229BINDING SITE FOR RESIDUE SO4 A1331
06AC6SOFTWAREALA A:218 , GLN A:219 , GLN A:229 , HIS A:232 , HOH A:2262 , HOH A:2263BINDING SITE FOR RESIDUE SO4 A1332
07AC7SOFTWARESER A:144 , ASP A:146 , ASP A:237 , PRO A:238 , HOH A:2274 , HOH A:2364 , HOH A:2365 , HOH A:2366BINDING SITE FOR RESIDUE SO4 A1333
08AC8SOFTWARETRP A:164 , GLU A:243 , LYS A:253 , ARG A:257 , HOH A:2284 , HOH A:2285BINDING SITE FOR RESIDUE SO4 A1334
09AC9SOFTWAREALA A:77 , HIS A:136 , GLU A:140 , HOH A:2120 , HOH A:2197BINDING SITE FOR RESIDUE SO4 A1335
10BC1SOFTWARESER A:246 , ASN A:250 , LYS A:253 , HOH A:2288BINDING SITE FOR RESIDUE SO4 A1336
11BC2SOFTWAREGLY A:57 , GLY A:58 , HOH A:2101BINDING SITE FOR RESIDUE SO4 A1337
12BC3SOFTWAREALA A:79 , GLY A:80 , LYS A:176 , HOH A:2125BINDING SITE FOR RESIDUE SO4 A1338
13BC4SOFTWAREPRO A:134 , ASP A:135 , HOH A:2185BINDING SITE FOR RESIDUE SO4 A1339

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:3 -A:15
2A:14 -A:278
3A:34 -A:114
4A:242 -A:307

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FNE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FNE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FNE)

(-) Exons   (0, 0)

(no "Exon" information available for 5FNE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........ee...................hhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee.........ee.........hhhhhhh...............ee........eehhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhee.hhhh................hhhh........................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fne A   1 ATCDDGRTTANAACCILFPILDDIQENLFDGAQCGEKVRESLRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSDVIPTPPALVGAAHLPAGFSLSDVEQACAATPFPALTADPGPVTSVPPVP 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FNE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FNE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FNE)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        VPL2_PLEER | O94753: 2boq 2vka 2w23 3fjw 3fkg 3fm1 3fm4 3fm6 3fmu 4fcn 4fcs 4fdq 4fef 4g05 5abn 5abo 5abq 5fnb

(-) Related Entries Specified in the PDB File

5fnb CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII SEPTUPLE MUTANT E37K, H39R, V160A, T184M, Q202L, D213A & G330R