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Title :   CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII SEPTUPLE MUTANT E37K, H39R, V160A, T184M, Q202L, D213A & G330R

Authors :   F. J. Medrano, A. Romero

Date :   13 Nov 15 (Deposition) - 13 Jul 16 (Release) - 13 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.79

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Oxidoreductase, Class Ii (Fungal) Peroxidases, Protoporphyrin Ix, Electron T Lignin Peroxidase, Lignin Degradation, Manganese Peroxidase, Independent Oxidation Phenolic Non-Phenolic Aromatics, Mnii Oxidation, Peroxidase, Polyvalent Peroxidase, Oxidoreductase Hydrogen Peroxide, Iron, Manganese, Metal-Binding, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Saez-Jimenez, S. Acebes, E. Garcia-Ruiz, A. Romero, V. Guallar, M. Alcalde, F. J. Medrano, A. T. Martinez, F. J. Ruiz-Duenas
Unveiling The Basis Of Alkaline Stability Of An Evolved Versatile Peroxidase.
Biochem. J. V. 473 1917 2016
PubMed-ID: 27118867 | Reference-DOI: 10.1042/BCJ20160248

Molecule 1 - VERSATILE PEROXIDASE VPL2
	Chains	:	A, B
	EC Number	:	1.11.1.16, 1.11.1.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	W3110
	Expression System Taxid	:	316407
	Mutation	:	YES
	Organism Common	:	BOLETUS OF THE STEPPES
	Organism Scientific	:	PLEUROTUS ERYNGII
	Organism Taxid	:	5323
	Strain	:	IJFM, A169
	Synonym	:	VERSATILE LIQUID PHASE PEROXIDASE 2, VERSATILE PEROXIDASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:48 , GLY A:60 , ASP A:62 , SER A:64 , HOH A:2069 , HOH A:2076	BINDING SITE FOR RESIDUE CA A 401
2	AC2	SOFTWARE	SER A:170 , ASP A:187 , THR A:189 , VAL A:192 , ASP A:194	BINDING SITE FOR RESIDUE CA A 402
3	AC3	SOFTWARE	ARG A:39 , GLU A:40 , LEU A:42 , ARG A:43 , PHE A:46 , GLU A:140 , PRO A:141 , LEU A:165 , LEU A:166 , SER A:168 , HIS A:169 , ALA A:172 , ALA A:173 , ALA A:174 , ASP A:175 , LYS A:176 , VAL A:177 , PHE A:186 , LEU A:228 , SER A:230 , HOH A:2058 , HOH A:2064 , HOH A:2065 , HOH A:2210 , HOH A:2214	BINDING SITE FOR RESIDUE HEM A 500
4	AC4	SOFTWARE	ASP B:48 , GLY B:60 , ASP B:62 , SER B:64 , HOH B:2049 , HOH B:2053	BINDING SITE FOR RESIDUE CA B 401
5	AC5	SOFTWARE	SER B:170 , ASP B:187 , THR B:189 , VAL B:192 , ASP B:194	BINDING SITE FOR RESIDUE CA B 402
6	AC6	SOFTWARE	ARG B:39 , GLU B:40 , PHE B:46 , GLU B:140 , PRO B:141 , LEU B:166 , SER B:168 , HIS B:169 , ALA B:172 , ALA B:173 , ALA B:174 , LEU B:228 , SER B:230 , MET B:262 , HOH B:2037 , HOH B:2039 , HOH B:2050	BINDING SITE FOR RESIDUE HEM B 500
7	AC7	SOFTWARE	ARG A:257 , HOH A:2275 , ASP B:143 , SER B:144 , SER B:147 , HOH B:2145 , HOH B:2152 , HOH B:2275 , HOH B:2276	BINDING SITE FOR RESIDUE SO4 B1330
8	AC8	SOFTWARE	ASP B:23 , PHE B:91 , LYS B:94 , HOH B:2277 , HOH B:2278	BINDING SITE FOR RESIDUE SO4 B1331

Asymmetric Unit

No.	Residues
1	A:3	-	A:15
2	A:14	-	A:278
3	A:34	-	A:114
4	A:242	-	A:307
5	B:3	-	B:15
6	B:14	-	B:278
7	B:34	-	B:114
8	B:242	-	B:307

(no "Cis Peptide Bond" information available for 5FNB)

(no "SAP(SNP)/Variant" information available for 5FNB)

(no "PROSITE Motif" information available for 5FNB)

(no "Exon" information available for 5FNB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.ee...eee...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........ee...................hhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee.........ee.........hhhhhhh...............ee........eehhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhee.hhhh................hhhh........................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnb A   1 ATCDDGRTTANAACCILFPILDDIQENLFDGAQCGEKVRESLRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPAEVVWLLASHSIAAADKVDPSIPGMPFDSTPGVFDSQFFIETLLKGRLFPGTAANKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSDVIPTPPALVGAAHLPAGFSLSDVEQACAATPFPALTADPGPVTSVPPVP 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Chain B from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.ee...eee...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........ee...................hhhhhhhhhhhhh.hhhhhhhhhhhhhhh..............hhhhhhh.........ee........eehhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhee.hhhh................hhhh........................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnb B   1 ATCDDGRTTANAACCILFPILDDIQENLFDGAQCGEKVRESLRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPAEVVWLLASHSIAAAGMPFDSTPGVFDSQFFIETLLKGRLNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSDVIPTPPALVGAAHLPAGFSLSDVEQACAATPFPALTADPGPVTSVPPVP 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  188       198       214       224       234       244       254       264       274       284       294       304       314       324     
                                                                                                                                                                                                       174|                     207|                                                                                                                   
                                                                                                                                                                                                        183                      214

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5FNB)

(no "CATH Domain" information available for 5FNB)

(no "Pfam Domain" information available for 5FNB)

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5fne	CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII TRIPLE MUTANT E37K, H39R & G330R

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Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (8, 8)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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Gene Ontology (11, 11)

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