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(-) Description

Title :  CRYSTAL STRUCTURE OF RAT CD45 EXTRACELLULAR REGION, DOMAINS D3-D4
 
Authors :  V. T. Chang, R. A. Fernandes, K. A. Ganzinger, S. F. Lee, C. Siebold, J. Mc P. Jonsson, M. Palayret, K. Harlos, C. H. Coles, E. Y. Jones, Y. Lui, E. H R. J. C. Gilbert, D. Klenerman, A. R. Aricescu, S. J. Davis
Date :  11 Nov 15  (Deposition) - 23 Mar 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (2x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Keywords :  Hydrolase, Receptor Protein Tyrosine Phosphatase C, Cd45, Ptprc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. T. Chang, R. A. Fernandes, K. A. Ganzinger, S. F. Lee, C. Siebold, J. Mccoll, P. Jonsson, M. Palayret, K. Harlos, C. H. Coles, E. Y. Jones, Y. Lui, E. Huang, R. J. Gilbert, D. Klenerman, A. R. Aricescu, S. J. Davi
Initiation Of T Cell Signaling By Cd45 Segregation At 'Close Contacts'.
Nat. Immunol. V. 17 574 2016
PubMed-ID: 26998761  |  Reference-DOI: 10.1038/NI.3392

(-) Compounds

Molecule 1 - RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell Line: CHO-K1
    Expression System Common: CHINESE HAMSTER
    Expression System Plasmid: PEE14
    Expression System Taxid: 10029
    Expression System Vector Type: PLASMID
    Fragment: EXTRACELLULAR REGION DOMAINS D3-D4, RESIDUES 357-546
    Organ: THYMUS
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: LEUKOCYTE COMMON ANTIGEN, L-CA, T200, CD45

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x):  B
Biological Unit 2 (2x): A 
Biological Unit 3 (1x): A 
Biological Unit 4 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:132 , ASN A:148 , GLN A:149 , SER A:150 , THR A:151BINDING SITE FOR RESIDUE FLC A1191
2AC2SOFTWAREASN A:20 , ALA A:98 , ARG A:99BINDING SITE FOR MONO-SACCHARIDE NAG A1189 BOUND TO ASN A 20
3AC3SOFTWARESER A:109 , ARG A:110 , ASN A:117BINDING SITE FOR MONO-SACCHARIDE NAG A1190 BOUND TO ASN A 117
4AC4SOFTWAREARG A:132 , ILE A:134 , ASN A:148 , TYR A:172 , LEU A:177 , HOH A:2026 , HOH A:2029 , THR B:146BINDING SITE FOR MONO-SACCHARIDE NAG A1188 BOUND TO ASN A 148
5AC5SOFTWAREASN B:20 , ALA B:98 , ARG B:99BINDING SITE FOR MONO-SACCHARIDE NAG B1189 BOUND TO ASN B 20
6AC6SOFTWAREARG B:110 , ALA B:111 , ASN B:117BINDING SITE FOR MONO-SACCHARIDE NAG B1190 BOUND TO ASN B 117
7AC7SOFTWARETHR A:146 , HOH A:2022 , ARG B:132 , ILE B:134 , ASN B:148 , TYR B:172 , LEU B:177 , HOH B:2026BINDING SITE FOR MONO-SACCHARIDE NAG B1188 BOUND TO ASN B 148

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:120 -A:152
2B:120 -B:152

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FN8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FN8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FN8)

(-) Exons   (0, 0)

(no "Exon" information available for 5FN8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................................................eeee...........eeee.........eeeeeee.....eeeeee..........eeeeeeee..eeeeeeee...eeee.......eeeeeeeee........eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fn8 A   3 DFGTPEMLPHVQCKNSTNSTTLVSWAEPASKHHGYILCYKKTPSEKCENLANDVNSFEVKNLRPYTEYTVSLFAYVIPAKDCNFRTKAARPGKVNGMKTSRASDNSINVTCNSPYEINGPEARYILEVKSGGSLVKTFNQSTCKFVVDNLYYSTDYEFLVYFYNGEYLGDPEIKPQST 187
                                    12        22        32        42        52        62        72      ||89        99       109       119       129       139       149       159       169       179        
                                                                                                       79|                                                                                                    
                                                                                                        87                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................................................eeee...........eeee.........eeeeeee.....eeeeee..........eeeeeeee..eeeeeeee...eeee.......eeeeeeeee........eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fn8 B   3 DFGTPEMLPHVQCKNSTNSTTLVSWAEPASKHHGYILCYKKTPSEKCENLANDVNSFEVKNLRPYTEYTVSLFAYVIPAKDCNFRTKAARPGKVNGMKTSRASDNSINVTCNSPYEINGPEARYILEVKSGGSLVKTFNQSTCKFVVDNLYYSTDYEFLVYFYNGEYLGDPEIKPQST 187
                                    12        22        32        42        52        62        72      ||89        99       109       119       129       139       149       159       169       179        
                                                                                                       79|                                                                                                    
                                                                                                        87
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FN8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FN8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FN8)

(-) Gene Ontology  (32, 32)

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 Related Entries

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(-) Related Entries Specified in the PDB File

5fmv CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D4
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5fn7 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D2