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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D3
 
Authors :  V. T. Chang, R. A. Fernandes, K. A. Ganzinger, S. F. Lee, C. Siebold, J. Mc P. Jonsson, M. Palayret, K. Harlos, C. H. Coles, E. Y. Jones, Y. Lui, E. H R. J. C. Gilbert, D. Klenerman, A. R. Aricescu, S. J. Davis
Date :  10 Nov 15  (Deposition) - 23 Mar 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Receptor Protein Tyrosine Phosphatase, Cd45, Ptprc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. T. Chang, R. A. Fernandes, K. A. Ganzinger, S. F. Lee, C. Siebold, J. Mccoll, P. Jonsson, M. Palayret, K. Harlos, C. H. Coles, E. Y. Jones, Y. Lui, E. Huang, R. J. Gilbert, D. Klenerman, A. R. Aricescu, S. J. Davis
Initiation Of T Cell Signaling By Cd45 Segregation At 'Close Contacts'.
Nat. Immunol. V. 17 574 2016
PubMed-ID: 26998761  |  Reference-DOI: 10.1038/NI.3392

(-) Compounds

Molecule 1 - RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C
    Chains: A
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293T
    Expression System Common: HUMAN
    Expression System Plasmid: PHLSEC
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: DOMAINS D1-D3, RESIDUES 223-479
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LEUKOCYTE COMMON ANTIGEN, L-CA, T200, CD45

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:30 , HIS A:54 , ASN A:55BINDING SITE FOR MONO-SACCHARIDE NAG A1267 BOUND TO ASN A 55
2AC2SOFTWAREASN A:61 , ASP A:81 , PHE A:172 , HIS A:203BINDING SITE FOR MONO-SACCHARIDE NAG A1268 BOUND TO ASN A 61
3AC3SOFTWARELYS A:160 , ASN A:163BINDING SITE FOR MONO-SACCHARIDE NAG A1266 BOUND TO ASN A 163
4AC4SOFTWAREHIS A:203 , ASN A:204 , ASN A:219 , ILE A:247 , MET A:258BINDING SITE FOR MONO-SACCHARIDE NAG A1265 BOUND TO ASN A 204
5AC5SOFTWARETHR A:206 , GLN A:230 , ASN A:231 , HIS A:243 , GLN A:251 , ASN A:253BINDING SITE FOR MONO-SACCHARIDE NAG A1269 BOUND TO ASN A 253

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:11 -A:71
2A:43 -A:48
3A:59 -A:116
4A:94 -A:105
5A:127 -A:150
6A:183 -A:259
7A:208 -A:217

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:73 -Pro A:74
2Gly A:176 -Glu A:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FN6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FN6)

(-) Exons   (0, 0)

(no "Exon" information available for 5FN6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh...eeeeeee....eeeeeee.....ee.hhh.eeeee....eeeeeee........eeeeee...hhh.eeeee..hhhhh...eeeeeee......hhh.eeeeee....eee..eeee.......eeeeeeeeee..eeeeeeeeeee.........eeeeeeeee..eeeeeee.......eeeeeeee..eeee..ee....eeee.......eeeeeeeeeee...eee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fn6 A  10 TCDEKYANITVDYLYNKETKLFTAKLNVNENVECGCTNNEVHNLTECKNASVSISHNSCTAPDKTLILDVPPGVEKFQLHDCTQVEKADTTICLKWKNIETFTCDTQNITYRFQCGNMIFDNKEIKLENLEPEHEYKCDSEILYNNHKFTNASKIIKTDFGSPGEPQIIFCRSEAAHQGVITWNPPQRSFHNFTLCYIKETEKDCLNLDKNLIKYDLQNLKPYTKYVLSLHAYIIAKVQRNGSAAMCHFTTK 264
                                    19        29        39    ||  52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
                                                             44|                                                                                                                                                                                                                        
                                                              48
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FN6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FN6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FN6)

(-) Gene Ontology  (43, 43)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:73 - Pro A:74   [ RasMol ]  
    Gly A:176 - Glu A:177   [ RasMol ]  
 

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  5fn6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTPRC_HUMAN | P08575: 1ygr 1ygu 5fmv 5fn7

(-) Related Entries Specified in the PDB File

5fmv CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D4
5fn7 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D2
5fn8 CRYSTAL STRUCTURE OF RAT CD45 EXTRACELLULAR REGION, DOMAINS D3-D4