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(-) Description

Title :  HUMAN NOTCH 1, EGF 4-7
 
Authors :  P. Weisshuhn, D. Sheppard, P. Taylor, P. Whiteman, S. Lea, P. Handford, C. Redfield
Date :  02 Nov 15  (Deposition) - 20 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.92
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transcription, Transmembrane, Developmental, Protein, Notch Signaling Pathway, Differentiation, Phosphorylation, Egf- Like Domain, Regulation, Receptor, Activator, Ank Repeat, Signalling, Glycoprotein, Extracellular, Egf, Notch, Jagged, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. C. Weisshuhn, D. Sheppard, P. Taylor, P. Whiteman, S. M. Lea, P. A. Handford, C. Redfield
Non-Linear And Flexible Regions Of The Human Notch1 Extracellular Domain Revealed By High-Resolution Structural Studies.
Structure V. 24 555 2016
PubMed-ID: 26996961  |  Reference-DOI: 10.1016/J.STR.2016.02.010

(-) Compounds

Molecule 1 - NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: EGF DOMAINS 4-7, UNP RESIDUES 140-294
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1, NOTCH 1 EXTRACELLULAR TRUNCATION, NEXT, NOTCH 1 INTRACELLULAR DOMAIN, NICD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:178 , VAL A:179 , GLU A:181 , ASN A:197 , GLU A:198 , SER A:201 , HOH A:2001BINDING SITE FOR RESIDUE CA A1295
2AC2SOFTWAREASN A:257 , ILE A:258 , ASP A:260 , ASP A:274 , GLY A:275 , HOH A:2006BINDING SITE FOR RESIDUE CA A1296

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:144 -A:155
2A:149 -A:164
3A:166 -A:175
4A:182 -A:195
5A:189 -A:204
6A:206 -A:215
7A:222 -A:233
8A:227 -A:243
9A:245 -A:254
10A:261 -A:272
11A:266 -A:281
12A:283 -A:292

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser A:223 -Pro A:224

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FM9)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5FM9)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......eeeee..eeeee....ee.....ee.hhhhhh........eeeee..eeeee....ee.....ee.............ee.........ee....ee.....ee.............eeee....eeee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fm9 A 141 ADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTE 294
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FM9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FM9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FM9)

(-) Gene Ontology  (191, 191)

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  NOTC1_HUMAN | P46531
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOTC1_HUMAN | P46531: 1pb5 1toz 1yyh 2f8x 2f8y 2he0 2vj3 3eto 3i08 3l95 3nbn 3v79 4cud 4cue 4cuf 4d0e 4d0f 5fma 5kzo

(-) Related Entries Specified in the PDB File

5fma HUMAN NOTCH 1, EGF 4-7