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(-) Description

Title :  HUMAN NOTCH 1, EGF 4-7
 
Authors :  P. Weisshuhn, D. Sheppard, P. Taylor, P. Whiteman, S. Lea, P. Handford, C. Redfield
Date :  02 Nov 15  (Deposition) - 13 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.46
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transcription, Transmembrane, Developmental, Protein, Notch Signaling Pathway, Differentiation, Phosphorylation, Egf- Like Domain, Regulation, Receptor, Activator, Ank Repeat, Signalling, Glycoprotein, Extracellular, Egf, Notch, Jagged, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. C. Weisshuhn, D. Sheppard, P. Taylor, P. Whiteman, S. M. Lea, P. A. Handford, C. Redfield
Non-Linear And Flexible Regions Of The Human Notch1 Extracellular Domain Revealed By High-Resolution Structural Studies.
Structure V. 24 555 2016
PubMed-ID: 26996961  |  Reference-DOI: 10.1016/J.STR.2016.02.010

(-) Compounds

Molecule 1 - NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: EGF DOMAINS 4-7, RESIDUES 142-294
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1, HUMAN NOTCH I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3EDO-1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:178 , VAL A:179 , GLU A:181 , ASN A:197 , GLU A:198 , SER A:201BINDING SITE FOR RESIDUE CA A1295
2AC2SOFTWAREASN A:257 , ILE A:258 , ASP A:260 , ASP A:274 , GLY A:275BINDING SITE FOR RESIDUE CA A1296
3AC3SOFTWAREASP B:178 , VAL B:179 , GLU B:181 , ASN B:197 , GLU B:198 , SER B:201BINDING SITE FOR RESIDUE CA B1295
4AC4SOFTWAREASN B:257 , ILE B:258 , ASP B:260 , ASP B:274 , GLY B:275BINDING SITE FOR RESIDUE CA B1296
5AC5SOFTWAREARG B:282BINDING SITE FOR RESIDUE CL B1297
6AC6SOFTWAREASN A:268 , GLY A:269 , PRO A:284 , GLU A:286 , CYS B:195 , HIS B:196BINDING SITE FOR RESIDUE EDO B1298
7AC7SOFTWAREGLN A:252BINDING SITE FOR RESIDUE CL B1299
8AC8SOFTWAREGLN A:177BINDING SITE FOR RESIDUE CA A1297

(-) SS Bonds  (22, 22)

Asymmetric Unit
No.Residues
1A:144 -A:155
2A:149 -A:164
3A:166 -A:175
4A:182 -A:195
5A:189 -A:204
6A:206 -A:215
7A:222 -A:233
8A:227 -A:243
9A:245 -A:254
10A:261 -A:272
11A:266 -A:281
12A:283 -A:292
13B:144 -B:155
14B:149 -B:164
15B:166 -B:175
16B:182 -B:195
17B:189 -B:204
18B:206 -B:215
19B:245 -B:254
20B:261 -B:272
21B:266 -B:281
22B:283 -B:292

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:223 -Pro A:224
2Ser B:223 -Pro B:224

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FMA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FMA)

(-) Exons   (0, 0)

(no "Exon" information available for 5FMA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......eeee...eeee....ee.....ee.hhhhhh........eeeee..eeeee....ee.....ee.............eeee.....eeee....ee.....ee.............eeee....eeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fma A 141 QDPCASNPCANGGQCLPFESYICHCPPSFHGPTCRQDVNECGEKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTE 294
                                   150       161       171       181       191       201       211       221       231       241       251       261       271       281       291   
                                            159|                                                                                                                                     
                                             161                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh......eee...eee....ee.....ee.hhhhhh........eeeee..eeeee....ee.....ee.............eeee.....eeee....ee.....ee.............eeee....eeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fma B 142 DPCASNPCANGGQCLPSYICHCPPSFHGPTCRQDVNECGEKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTE 294
                                   151     ||164       174       184       194       204       214       224       234       244       254       264       274       284       294
                                         157|                                                                                                                                     
                                          161
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FMA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FMA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FMA)

(-) Gene Ontology  (191, 191)

Asymmetric Unit(hide GO term definitions)

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  NOTC1_HUMAN | P46531
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOTC1_HUMAN | P46531: 1pb5 1toz 1yyh 2f8x 2f8y 2he0 2vj3 3eto 3i08 3l95 3nbn 3v79 4cud 4cue 4cuf 4d0e 4d0f 5fm9 5kzo

(-) Related Entries Specified in the PDB File

5fm9 HUMAN NOTCH 1, EGF 4-7