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(-) Description

Title :  STRUCTURE OF E.COLI INDUCIBLE LYSINE DECARBOXYLASE AT ACTIVE PH
 
Authors :  E. Kandiah, D. Carriel, J. Perard, H. Malet, M. Bacia, K. Liu, S. W. S. Cha W. A. Houry, S. Ollagnier De Choudens, S. Elsen, I. Gutsche
Date :  20 Oct 15  (Deposition) - 21 Sep 16  (Release) - 14 Dec 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (10x)
Keywords :  Lyase, Acid-Stress, Lysine Decarboxylase, Rava, Cage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Kandiah, D. Carriel, J. Perard, H. Malet, M. Bacia, K. Liu, S. W. S. Chan, W. A. Houry, S. Ollagnier De Choudens, S. Elsen, I. Gutsche
Structural Insights Into The Escherichia Coli Lysine Decarboxylases And Molecular Determinants Of Interaction With The Aaa+ Atpase Rava.
Sci. Rep. V. 6 24601 2016
PubMed-ID: 27080013  |  Reference-DOI: 10.1038/SREP24601

(-) Compounds

Molecule 1 - LYSINE DECARBOXYLASE, INDUCIBLE
    Chains: A
    EC Number: 4.1.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
    Expression System Taxid: 511145
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Synonym: LDC, LDC, INDUCIBLE LYSINE DECARBOXYLASE, INDUCIBLE LYSINE DECARBOXYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (10x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FKX)

(-) Sites  (0, 0)

(no "Site" information available for 5FKX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FKX)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Thr A:149 -Pro A:150
2Asn A:305 -Ser A:306
3Tyr A:652 -Pro A:653
4Pro A:653 -Pro A:654

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FKX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FKX)

(-) Exons   (0, 0)

(no "Exon" information available for 5FKX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:710
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....hhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....eeee.......hhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh......hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhh....eeeee...hhhhhhhhh....eeeee..ee.....ee..hhhhhhhhhhhhhhhhh.......eeee..........hhhhhhhhh...eeeee.....hhhhhhhhh.............eeeeeee..........eeeeee...hhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...........eee................eee...eeeee...............hhhhhhhhhhhh.....eee..eeeee.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhh..eeeee.hhhh........ee...........ee....hhhhhhhhhhhhhhh.........ee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fkx A   1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEYINTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKE 711
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                                                                                                                                                                                                                                                                                                                                                                                                       366|                                                                                                                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                        368
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FKX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FKX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FKX)

(-) Gene Ontology  (9, 9)

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  Cis Peptide Bonds
    Asn A:305 - Ser A:306   [ RasMol ]  
    Pro A:653 - Pro A:654   [ RasMol ]  
    Thr A:149 - Pro A:150   [ RasMol ]  
    Tyr A:652 - Pro A:653   [ RasMol ]  
 
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        LDCI_ECOLI | P0A9H3: 3n75 3q16 4upb 4upf 5fl2

(-) Related Entries Specified in the PDB File

5fkz STRUCTURE OF E.COLI CONSTITUTIVE LYSINE DECARBOXYLASE
5fl2 REVISITED CRYO-EM STRUCTURE OF INDUCIBLE LYSINE DECARBOXYLASE COMPLEXED WITH LARA DOMAIN OF RAVA ATPASE RELATED ID: EMD-3204 RELATED DB: EMDB