5FKZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   STRUCTURE OF E.COLI CONSTITUTIVE LYSINE DECARBOXYLASE

Authors :   E. Kandiah, D. Carriel, J. Perard, H. Malet, M. Bacia, K. Liu, S. W. S. Cha W. A. Houry, S. Ollagnier De Choudens, S. Elsen, I. Gutsche

Date :   20 Oct 15 (Deposition) - 21 Sep 16 (Release) - 21 Sep 16 (Revision)

Method :   ELECTRON MICROSCOPY

Resolution :   5.50

Chains :   Asym. Unit : E
Biol. Unit 1: E  (10x)

Keywords :   Lyase, Acid-Stress, Lysine Decarboxylase, Rava, Cage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Kandiah, D. Carriel, J. Perard, H. Malet, M. Bacia, K. Liu, S. W. S. Chan, W. A. Houry, S. Ollagnier De Choudens, S. Elsen, I. Gutsche
Structural Insights Into The Escherichia Coli Lysine Decarboxylases And Molecular Determinants Of Interaction With The Aaa+ Atpase Rava.
Sci. Rep. V. 6 24601 2016
PubMed-ID: 27080013 | Reference-DOI: 10.1038/SREP24601

Molecule 1 - LYSINE DECARBOXYLASE, CONSTITUTIVE
	Chains	:	E
	EC Number	:	4.1.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	MG1655
	Expression System Taxid	:	511145
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K-12
	Synonym	:	LDC, CONSTITUTIVE LYSINE DECARBOXYLASE

		1
Asymmetric Unit	:	E
Biological Unit 1 (10x)	:	E

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 5FKZ)

(no "Site" information available for 5FKZ)

(no "SS Bond" information available for 5FKZ)

Asymmetric Unit

No.	Residues
1	Thr E:149	-	Pro E:150
2	Asn E:305	-	Ser E:306
3	Tyr E:652	-	Pro E:653
4	Pro E:653	-	Pro E:654

(no "SAP(SNP)/Variant" information available for 5FKZ)

(no "PROSITE Motif" information available for 5FKZ)

(no "Exon" information available for 5FKZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain E from PDB  Type:PROTEIN  Length:710
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....hhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....eeee.......hhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh......hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh..eeeee..ee.....ee..hhhhhhhhhhhhhhhhh.......eeeee.........hhhhhhhhh...eeeee.....hhhhhhhhh.............eeeeee............eeeeee...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...........ee..................ee...eeeee...............hhhhhhhhhhhh.....ee...eeeee.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhh..eeeee.hhh.........eee..........ee.hhhhhhhhhhhhhhhhhh........eee..ee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fkz E   1 MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMRQYTDEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPSGSTLLIDRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVAGKVIFETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSYDLNLRIKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDTLPEMIMTPHQAWQRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQDEDGVYRVRVLK 710
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Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5FKZ)

(no "CATH Domain" information available for 5FKZ)

(no "Pfam Domain" information available for 5FKZ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5fkz)

	Sites
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	Cis Peptide Bonds
		Asn E:305 - Ser E:306	[ RasMol ]
		Pro E:653 - Pro E:654	[ RasMol ]
		Thr E:149 - Pro E:150	[ RasMol ]
		Tyr E:652 - Pro E:653	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	5fkz
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5fkx	STRUCTURE OF E.COLI INDUCIBLE LYSINE DECARBOXYLASE AT ACTIVE PH
5fl2	REVISITED CRYO-EM STRUCTURE OF INDUCIBLE LYSINE DECARBOXYLASE COMPLEXED WITH LARA DOMAIN OF RAVA ATPASE RELATED ID: EMD-3205 RELATED DB: EMDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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Exons (0, 0)

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