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(-) Description

Title :  N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS-1-60: G291D F323 MUTANT IN COMPLEX WITH N-ACETYL PHENYLALANINE
 
Authors :  G. Sanchez Carron, D. Campopiano, G. Grogan
Date :  12 Oct 15  (Deposition) - 23 Nov 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  Lyase, Isomerase, Racemase, N-Acyl Amino Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Sanchez-Carron, D. Campopiano, G. Grogan
Structure Of N-Acylamino Acid Racemase Mutants In Complex With Substrates
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - O-SUCCINYLBENZOATE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.2.1.113
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-20B
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: AMYCOLATOPSIS SP.
    Organism Taxid: 37632
    Strain: TS-1-60
    Synonym: OSB SYNTHASE, OSBS, 4-(2-CARBOXYPHENYL)-4-OXYBUTYRIC ACID SYNTHASE, O-SUCCINYLBENZOIC ACID SYNTHASE, N-ACYL AMINO ACID RACEMASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
15CR4Ligand/IonN-ACETYL-L-PHENYLALANINE
2MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
15CR8Ligand/IonN-ACETYL-L-PHENYLALANINE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:19 , GLN B:26 , MET B:50 , SER B:135 , LYS B:161 , LYS B:163 , ASP B:189 , ASN B:191 , ASP B:239 , LYS B:263 , ASP B:291 , MET B:292 , ILE B:293 , TYR B:323 , MG B:1369 , HOH B:2100BINDING SITE FOR RESIDUE 5CR B1368
2AC2SOFTWAREPHE A:19 , GLN A:26 , MET A:50 , SER A:135 , LYS A:161 , LYS A:163 , ASP A:189 , ASN A:191 , ASP A:239 , LYS A:263 , ASP A:291 , MET A:292 , ILE A:293 , TYR A:323 , MG A:1369 , HOH A:2097BINDING SITE FOR RESIDUE 5CR A1368
3AC3SOFTWAREPHE C:19 , PHE C:23 , GLN C:26 , MET C:50 , SER C:135 , LYS C:161 , LYS C:163 , ASP C:189 , ASN C:191 , ASP C:239 , LYS C:263 , ASP C:291 , MET C:292 , ILE C:293 , TYR C:323 , MG C:1369 , HOH C:2064BINDING SITE FOR RESIDUE 5CR C1368
4AC4SOFTWAREPHE D:19 , MET D:50 , SER D:135 , LYS D:161 , LYS D:163 , ASP D:189 , ASN D:191 , ASP D:239 , LYS D:263 , ASP D:291 , MET D:292 , ILE D:293 , TYR D:323 , MG D:1370 , HOH D:2075BINDING SITE FOR RESIDUE 5CR D1369
5AC5SOFTWAREASP D:189 , GLU D:214 , ASP D:239 , 5CR D:1369 , HOH D:2080BINDING SITE FOR RESIDUE MG D1370
6AC6SOFTWARELYS A:161 , ASP A:189 , GLU A:214 , ASP A:239 , 5CR A:1368 , HOH A:2101BINDING SITE FOR RESIDUE MG A1369
7AC7SOFTWAREASP B:189 , GLU B:214 , ASP B:239 , 5CR B:1368 , HOH B:2114BINDING SITE FOR RESIDUE MG B1369
8AC8SOFTWAREASP C:189 , GLU C:214 , ASP C:239 , 5CR C:1368 , HOH C:2070BINDING SITE FOR RESIDUE MG C1369

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FJT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FJT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FJT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FJT)

(-) Exons   (0, 0)

(no "Exon" information available for 5FJT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee..eeeeee............hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhh..............eee...........hhhhhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjt A   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMIETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIG 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       


Chain B from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee..eeeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhhh.............eee...........hhhhhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjt B   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMIETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIG 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       


Chain C from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee..eeeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhh..............eee...........hhhhhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjt C   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMIETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIG 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       


Chain D from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee..eeeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhh..............eee...........hhhhhhhheeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjt D   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMIETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIGS 368
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FJT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FJT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FJT)

(-) Gene Ontology  (7, 7)

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 Related Entries

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UniProtKB/TrEMBL
        Q44244_9PSEU | Q44244: 1sja 1sjb 1sjc 1sjd 4a6g 5fjo 5fjp 5fjr 5fju

(-) Related Entries Specified in the PDB File

5fjo N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: G291D-F323Y MUTANT IN COMPLEX WITH N-ACETYL NAPHTHYLALANINE
5fjp N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP TS- 1-60: G291D F323Y I293G MUTANT IN COMPLEX WITH N- ACETYL NAPHTHYLALANINE
5fjr N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: Q26A M50I G291D F323Y MUTANT IN COMPLEX WITH N-ACETYL NAPTHYLALANINE
5fju N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: Q26A M50I G291D F323Y MUTANT IN COMPLEX WITH N-ACETYL PHENYLALANINE