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(-) Description

Title :  N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP TS-1-60: G291D F323Y I293G MUTANT IN COMPLEX WITH N-ACETYL NAPHTHYLALANINE
 
Authors :  G. Sanchez Carron, D. Campopiano, G. Grogan
Date :  12 Oct 15  (Deposition) - 16 Nov 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.58
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,D  (1x)
Biol. Unit 2:  A,C  (1x)
Keywords :  Lyase, Racemase, N-Acylamino Acid, Naphthylalanine, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Sanchez-Carron, D. Campopiano, G. Grogan
Structure Of N-Acylamino Acid Racemase Mutants In Complex With Substrates
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - O-SUCCINYLBENZOATE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.2.1.113
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-20B
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: AMYCOLATOPSIS SP.
    Organism Taxid: 37632
    Strain: TS-1-60
    Synonym: OSB SYNTHASE, OSBS, N-ACYL AMINO ACID RACEMASE, 4-(2'-CARBOXYPHENYL)-4-OXYBUTYRIC ACID SYNTHASE, O-SUCCINYLBENZOIC ACID SYNTHASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):  B D
Biological Unit 2 (1x): A C 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2NPQ4Ligand/IonN-ACETYL NAPHTHYLALANINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NPQ2Ligand/IonN-ACETYL NAPHTHYLALANINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NPQ2Ligand/IonN-ACETYL NAPHTHYLALANINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:19 , GLN B:26 , MET B:50 , SER B:135 , LYS B:161 , LYS B:163 , ASP B:189 , ASN B:191 , ASP B:239 , LYS B:263 , ASP B:291 , ASP B:316 , TYR B:323 , MG B:1370 , HOH B:2051BINDING SITE FOR RESIDUE NPQ B1369
2AC2SOFTWAREPHE D:19 , GLN D:26 , MET D:50 , SER D:135 , LYS D:161 , LYS D:163 , ASP D:189 , ASN D:191 , GLU D:214 , ASP D:239 , LYS D:263 , ASP D:291 , ASP D:316 , TYR D:323 , MG D:1369 , HOH D:2028BINDING SITE FOR RESIDUE NPQ D1368
3AC3SOFTWAREPHE C:19 , GLN C:26 , SER C:135 , LYS C:161 , LYS C:163 , ASP C:189 , ASN C:191 , ASP C:239 , LYS C:263 , ASP C:291 , MET C:292 , TYR C:323 , MG C:1369BINDING SITE FOR RESIDUE NPQ C1368
4AC4SOFTWAREPHE A:19 , GLN A:26 , SER A:135 , LYS A:161 , LYS A:163 , ASP A:189 , ASN A:191 , LYS A:263 , ASP A:291 , ASP A:316 , TYR A:323 , MG A:1370 , HOH A:2055BINDING SITE FOR RESIDUE NPQ A1369
5AC5SOFTWARELYS A:161 , ASP A:189 , ASN A:191 , GLU A:214 , ASP A:239 , NPQ A:1369 , HOH A:2062BINDING SITE FOR RESIDUE MG A1370
6AC6SOFTWAREASP B:189 , GLU B:214 , ASP B:239 , NPQ B:1369 , HOH B:2056BINDING SITE FOR RESIDUE MG B1370
7AC7SOFTWAREASP C:189 , ASN C:191 , GLU C:214 , ASP C:239 , NPQ C:1368 , HOH C:2037BINDING SITE FOR RESIDUE MG C1369
8AC8SOFTWARELYS D:161 , ASP D:189 , GLU D:214 , ASP D:239 , NPQ D:1368 , HOH D:2031BINDING SITE FOR RESIDUE MG D1369

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FJP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FJP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FJP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FJP)

(-) Exons   (0, 0)

(no "Exon" information available for 5FJP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee..eeeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhh..............eee...........hhhhhhhheeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjp A   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMGETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIGS 368
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360        


Chain B from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhhh.............eee...........hhhhhhhheeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjp B   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMGETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIGS 368
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360        


Chain C from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhh..............eee...........hhhhhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjp C   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMGETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIG 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       


Chain D from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee....hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh............hhhhh..............eee...........hhhhhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjp D   1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMGETGLGRAANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAKVWIG 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FJP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FJP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FJP)

(-) Gene Ontology  (7, 7)

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        Q44244_9PSEU | Q44244: 1sja 1sjb 1sjc 1sjd 4a6g 5fjo 5fjr 5fjt 5fju

(-) Related Entries Specified in the PDB File

5fjo N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: G291D-F323Y MUTANT IN COMPLEX WITH N-ACETYL NAPHTHYLALANINE
5fjr N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: Q26A M50I G291D F323Y MUTANT IN COMPLEX WITH N-ACETYL NAPTHYLALANINE
5fjt N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: G291D F323 MUTANT IN COPMPLEX WITH N-ACETYL PHENYLALANINE
5fju N-ACYL AMINO ACID RACEMASE FROM AMYCOLATOPSIS SP. TS- 1-60: Q26A M50I G291D F323Y MUTANT IN COMPLEX WITH N-ACETYL PHENYLALANINE