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(-) Description

Title :  CRYSTAL STRUCTURE OF RIG-I HELICASE-RD IN COMPLEX WITH 24-MER 5' TRIPHOSPHATE HAIRPIN RNA
 
Authors :  C. Wang, J. Marcotrigiano, M. Miller, F. Jiang
Date :  09 Dec 15  (Deposition) - 13 Jan 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Complex, Rig-I, Capped Rna, Self Versus Non-Self, Innate Immunity, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Devarkar, C. Wang, M. T. Miller, A. Ramanathan, F. Jiang, A. G. Khan, S. S. Patel, J. Marcotrigiano
Structural Basis For M7G Recognition And 2'-O-Methyl Discrimination In Capped Rnas By The Innate Immune Receptor Rig-I.
Proc. Natl. Acad. Sci. Usa V. 113 596 2016
PubMed-ID: 26733676  |  Reference-DOI: 10.1073/PNAS.1515152113

(-) Compounds

Molecule 1 - PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
    Chains: A, C, E, G, I, K
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DDX58
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DEAD BOX PROTEIN 58,RIG-I-LIKE RECEPTOR 1,RLR-1,RETINOIC ACID-INDUCIBLE GENE 1 PROTEIN,RIG-1,RETINOIC ACID-INDUCIBLE GENE I PROTEIN,RIG-I
 
Molecule 2 - RNA (5'- R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP *C)-3')
    Chains: B, D, F, H, J, L
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
1GTP6Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
2MG8Ligand/IonMAGNESIUM ION
3ZN6Ligand/IonZINC ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:810 , CYS A:813 , CYS A:864 , CYS A:869binding site for residue ZN A 1001
02AC2SOFTWAREPHE A:285 , PRO A:286 , GLN A:287 , GLN A:289binding site for residue MG A 1002
03AC3SOFTWAREGLN A:349 , PRO A:382 , A B:3binding site for residue MG A 1003
04AC4SOFTWARELYS A:270binding site for residue MG A 1004
05AC5SOFTWAREARG A:664 , HIS A:830 , HIS A:847 , PHE A:853 , LYS A:858 , LYS A:861 , ASP A:872 , ILE A:875 , LYS A:888 , A B:2 , C B:24binding site for residue GTP B 101
06AC6SOFTWARECYS C:810 , CYS C:813 , CYS C:864 , CYS C:869binding site for residue ZN C 1001
07AC7SOFTWARECYS E:810 , CYS E:813 , CYS E:864 , CYS E:869binding site for residue ZN E 1001
08AC8SOFTWAREASN E:376 , A F:5binding site for residue MG E 1002
09AC9SOFTWARECYS G:810 , CYS G:813 , CYS G:864 , CYS G:869binding site for residue ZN G 1001
10AD1SOFTWARETHR G:636 , LEU G:639binding site for residue MG G 1002
11AD2SOFTWAREASN G:341 , ASN K:341binding site for residue MG G 1003
12AD3SOFTWARECYS I:810 , CYS I:813 , CYS I:864 , CYS I:869binding site for residue ZN I 1001
13AD4SOFTWAREASN E:341 , ASN I:341binding site for residue MG I 1002
14AD5SOFTWARECYS K:810 , CYS K:813 , CYS K:864 , CYS K:869binding site for residue ZN K 1001
15AD6SOFTWAREPHE K:285 , PRO K:286 , GLN K:289binding site for residue MG K 1002
16AD7SOFTWAREHIS C:830 , HIS C:847 , PHE C:853 , LYS C:858 , LYS C:861 , ASP C:872 , ILE C:875 , VAL C:886 , LYS C:888 , TRP C:908 , A D:3 , U D:23 , C D:24binding site for Di-nucleotide GTP D 101 and A D 2
17AD8SOFTWAREHIS E:830 , HIS E:847 , LYS E:851 , PHE E:853 , LYS E:858 , LYS E:861 , ILE E:875 , VAL E:886 , LYS E:888 , TRP E:908 , A F:3 , U F:23 , C F:24binding site for Di-nucleotide GTP F 101 and A F 2
18AD9SOFTWAREHIS G:830 , HIS G:847 , PHE G:853 , LYS G:858 , LYS G:861 , ASP G:872 , ILE G:875 , LYS G:888 , TRP G:908 , A H:3 , U H:23 , C H:24binding site for Di-nucleotide GTP H 101 and A H 2
19AE1SOFTWAREHIS I:830 , HIS I:847 , PHE I:853 , LYS I:858 , LYS I:861 , ASP I:872 , ILE I:875 , VAL I:886 , LYS I:888 , TRP I:908 , A J:3 , U J:23 , C J:24binding site for Di-nucleotide GTP J 101 and A J 2
20AE2SOFTWAREHIS K:830 , HIS K:847 , PHE K:853 , LYS K:858 , LYS K:861 , ASP K:872 , ILE K:875 , LYS K:888 , TRP K:908 , A L:3 , U L:23 , C L:24binding site for Di-nucleotide GTP L 101 and A L 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F9H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F9H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F9H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F9H)

(-) Exons   (0, 0)

(no "Exon" information available for 5F9H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:646
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhh........eeee......eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....eeee...eeee...eeee........eeeee.....ee..eeeeeeeee.......eeeeeeee..eeeeee....eeeee.....ee...hhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9h A 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490  ||   508       518       528       538       548       558       568       579       589       599       609       619       629       639       649       659    || 694       704       714       724       734       744       754       764       774       784       794|      806       816       826       836       846       856       866       876       886       896       906       916      
                                                                                                                                                                                                                                                                                      493|                                                                        577|                                                                                  664|                                                                                                     794|                                                                                                                             
                                                                                                                                                                                                                                                                                       502                                                                         579                                                                                   690                                                                                                      797                                                                                                                             


Chain B from PDB  Type:RNA  Length:23
                                                       
                 5f9h B   2 AAUAUAAUAGUGAUAUUAUAUUC  24
                                    11        21   


Chain C from PDB  Type:PROTEIN  Length:647
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhh......eeeeee.......hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee...........eeee..............eeeee....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......eeeee.....eeee...eeee...eeee...hhhh.eeeee.....ee..eeeeeeeee.hhhh..eeeeeeee..eeeeee....eeeee.....ee............ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9h C 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490 ||    509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659      |689       699       709       719       729       739       749       759       769       779       789   ||  805       815       825       835       845       855       865       875       885       895       905       915       
                                                                                                                                                                                                                                                                                     492|                                                                                                                                                                 666|                                                                                                       793|                                                                                                                          
                                                                                                                                                                                                                                                                                      502                                                                                                                                                                  687                                                                                                        800                                                                                                                          


Chain D from PDB  Type:RNA  Length:23
                                                       
                 5f9h D   2 AAUAUAAUAGUGAUAUUAUAUUC  24
                                    11        21   


Chain E from PDB  Type:PROTEIN  Length:638
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhh......eeeeee......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee......eeee..............eeeee....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........eeee.....eeee...eeee...eeee.hhhhhhheeeee...........eeeeeee.......eeeeeeee..eeeeee....eeee.....eee..hhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9h E 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIDKFKYIIAQLMRDTESLAKRICREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATVQTLYSKWKDFHFEKIPFDPAE 922
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461     ||472       482       503       513       523       533       543       553       563       573||     587       597       607       617       627       637       647       657     ||692       702       712       722       732       742       752       762       772       782       792  ||   803       813       823       833       843       853       863       873       883       893     ||904       914        
                                                                                                                                                                                                                                                           467|                  490|                                                                     574|                                                                                 663|                                                                                                       795|                                                                                                   899|                     
                                                                                                                                                                                                                                                            469                   502                                                                      579                                                                                  689                                                                                                        797                                                                                                    901                     


Chain F from PDB  Type:RNA  Length:23
                                                       
                 5f9h F   2 AAUAUAAUAGUGAUAUUAUAUUC  24
                                    11        21   


Chain G from PDB  Type:PROTEIN  Length:653
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhhh..eee....hhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh....eee...............eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........eeee.....eeee...eeee...eeee...hhhh.eeeee.....ee..eeeeeeeee.hhhh..eeeeeeee..eeeeee....eeeee....eeee..hhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9h G 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 ||    509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659    || 685       695       705       715       725       735       745       755       765       775       785       799       809       819       829       839       849       859       869       879       889       899       909       919   
                                                                                                                                                                                                                                                                                     491|                                                                                                                                                               664|                                                                                                             793|                                                                                                                            
                                                                                                                                                                                                                                                                                      502                                                                                                                                                                681                                                                                                              798                                                                                                                            


Chain H from PDB  Type:RNA  Length:23
                                                       
                 5f9h H   2 AAUAUAAUAGUGAUAUUAUAUUC  24
                                    11        21   


Chain I from PDB  Type:PROTEIN  Length:644
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeehhhhhhhhhhh....hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhh......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee........eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eeeee.....eeee...eeee...eeee...hhhh.eeeee.....ee..eeeeeeeee.hhhh..eeeeeeee..eeeeee....eeeee.....eee..hhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9h I 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIDKFKYIIAQLMRDTESLAKRICKDEFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM 923
                                   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       401       411       421       431       441       451       461     ||472       482       492|      512       522       532       542       552       562       572    || 583       593       603       613       623       633       643       653       663 ||    696       706       716       726       736       746       756       766       776       786       799       809       819       829       839       849       859       869       879       889       899       909       919    
                                                                                                                                                                                       397|                                                                467|                    492|                                                                       577|                                                                                   665|                                                                                                      794|                                                                                                                             
                                                                                                                                                                                        400                                                                 469                     503                                                                        579                                                                                    689                                                                                                       798                                                                                                                             


Chain J from PDB  Type:RNA  Length:23
                                                       
                 5f9h J   2 AAUAUAAUAGUGAUAUUAUAUUC  24
                                    11        21   


Chain K from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhh......eeeeee......hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh....eee.....eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eeeee.....eeee...eeee...eeee.hhhhhh.eeeee.....ee..eeeeeeeee.......eeeeeeee..eeeeee....eeeee.....eee..hhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9h K 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIDKFKYIIAQLMRDTESLAKRIREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAADEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461     ||472       482      |504       514       524       534       544       554       564       574  ||   586       596       606       616       626       636       646       656      |692       702       712       722       732       742       752       762       772       782       792 ||    805       815       825       835       845       855       865       875       885       895       905       915       
                                                                                                                                                                                                                                                           467|                 489|                                                                        577|                                                                                663|                                                                                                     794|                                                                                                                            
                                                                                                                                                                                                                                                            469                  502                                                                         580                                                                                 690                                                                                                      798                                                                                                                            


Chain L from PDB  Type:RNA  Length:23
                                                       
                 5f9h L   2 AAUAUAAUAGUGAUAUUAUAUUC  24
                                    11        21
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DDX58_HUMAN | O95786: 2lwd 2lwe 2qfb 2qfd 2rmj 2ykg 3lrn 3lrr 3ncu 3og8 3zd6 3zd7 4ay2 4bpb 4nqk 4on9 4p4h 5e3h 5f98 5f9f

(-) Related Entries Specified in the PDB File

5f98 5f9f