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(-) Description

Title :  CRYSTAL STRUCTURE OF RIG-I HELICASE-RD IN COMPLEX WITH 24-MER BLUNT-END HAIRPIN RNA
 
Authors :  C. Wang, J. Marcotrigiano, M. T. Miller, F. Jiang
Date :  09 Dec 15  (Deposition) - 13 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Complex, Rig-I, Capped Rna, Self Versus Non-Self, Innate Immunity, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Devarkar, C. Wang, M. T. Miller, A. Ramanathan, F. Jiang, A. G. Khan, S. S. Patel, J. Marcotrigiano
Structural Basis For M7G Recognition And 2'-O-Methyl Discrimination In Capped Rnas By The Innate Immune Receptor Rig-I.
Proc. Natl. Acad. Sci. Usa V. 113 596 2016
PubMed-ID: 26733676  |  Reference-DOI: 10.1073/PNAS.1515152113

(-) Compounds

Molecule 1 - PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
    Chains: A, C, E, G, I, K
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DDX58
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DEAD BOX PROTEIN 58,RIG-I-LIKE RECEPTOR 1,RLR-1,RETINOIC ACID-INDUCIBLE GENE 1 PROTEIN,RIG-1,RETINOIC ACID-INDUCIBLE GENE I PROTEIN,RIG-I
 
Molecule 2 - RNA (5'- R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP* UP*C)-3')
    Chains: B, D, F, H, J, L
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: 5'OH HP RNA
    Synonym: 5'OH HP RNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 29)

Asymmetric/Biological Unit (4, 29)
No.NameCountTypeFull Name
1BU313Ligand/Ion(R,R)-2,3-BUTANEDIOL
2ETF4Ligand/IonTRIFLUOROETHANOL
3MG6Ligand/IonMAGNESIUM ION
4ZN6Ligand/IonZINC ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:810 , CYS A:813 , CYS A:864 , CYS A:869binding site for residue ZN A 1001
02AC2SOFTWARELYS A:723binding site for residue MG A 1002
03AC3SOFTWAREILE A:262 , ALA A:264 , CYS A:268 , LYS A:270 , LEU A:408 , THR A:409binding site for residue ETF A 1003
04AC4SOFTWAREGLU A:510 , ARG A:546 , ASP A:550 , TYR A:566 , THR A:636 , A B:19binding site for residue BU3 A 1004
05AC5SOFTWAREGLY A:269 , LYS A:270 , THR A:271 , PHE A:272binding site for residue BU3 A 1005
06AC6SOFTWARECYS C:810 , CYS C:813 , CYS C:864 , CYS C:869binding site for residue ZN C 1001
07AC7SOFTWARELYS C:666 , THR C:667 , ASN C:668 , LYS C:888binding site for residue BU3 C 1003
08AC8SOFTWAREARG A:320 , GLN A:336 , ILE A:337 , ASN A:340 , ASN A:341 , ARG C:320 , ILE C:337 , ASN C:340 , ASN C:341binding site for residue BU3 C 1004
09AC9SOFTWAREASN C:376 , ALA C:700 , A D:5 , U D:22binding site for residue BU3 C 1005
10AD1SOFTWAREILE C:262 , ALA C:264 , CYS C:268 , LYS C:270 , LEU C:408 , THR C:409binding site for residue BU3 C 1006
11AD2SOFTWARECYS E:810 , CYS E:813 , CYS E:864 , CYS E:869binding site for residue ZN E 1001
12AD3SOFTWARELYS E:666 , ASN E:668 , GLN E:669 , ASP E:872 , LYS E:888binding site for residue ETF E 1002
13AD4SOFTWARELEU E:250 , ILE E:262 , ALA E:264 , CYS E:268 , LYS E:270 , VAL E:273 , LEU E:408 , THR E:409binding site for residue BU3 E 1003
14AD5SOFTWARELEU E:714 , TYR E:717 , GLY E:719 , ASN E:720 , LYS E:723 , MET E:724 , THR E:727 , GLU E:751binding site for residue BU3 E 1004
15AD6SOFTWARECYS G:810 , CYS G:813 , CYS G:864 , CYS G:869binding site for residue ZN G 1001
16AD7SOFTWAREARG G:320 , ILE G:337 , ASN G:340 , ASN G:341 , GLN K:336 , ILE K:337 , ASN K:340 , ASN K:341binding site for residue ETF G 1002
17AD8SOFTWAREILE G:262 , ALA G:264 , PRO G:265 , CYS G:268 , LYS G:270 , THR G:409 , GLU G:702binding site for residue BU3 G 1003
18AD9SOFTWAREALA G:329 , GLU G:330 , ILE G:350 , ASN G:353 , ASN G:354binding site for residue BU3 G 1004
19AE1SOFTWARELEU G:714 , TYR G:717 , GLY G:719 , LYS G:723 , THR G:727 , GLU G:751binding site for residue BU3 G 1005
20AE2SOFTWARECYS I:810 , CYS I:813 , CYS I:864 , CYS I:869binding site for residue ZN I 1001
21AE3SOFTWARELYS I:723binding site for residue MG I 1003
22AE4SOFTWAREILE I:262 , ALA I:264 , CYS I:268 , LYS I:270 , LEU I:408 , THR I:409binding site for residue BU3 I 1004
23AE5SOFTWARECYS K:810 , CYS K:813 , CYS K:864 , CYS K:869binding site for residue ZN K 1001
24AE6SOFTWARELYS K:723binding site for residue MG K 1002
25AE7SOFTWAREPRO K:456 , LYS K:458 , THR K:727 , ARG K:728 , CYS K:738binding site for residue ETF K 1003
26AE8SOFTWAREILE K:262 , ALA K:264 , CYS K:268 , LYS K:270 , LEU K:408 , THR K:409binding site for residue BU3 K 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F9F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F9F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F9F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F9F)

(-) Exons   (0, 0)

(no "Exon" information available for 5F9F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:673
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.....eeeehhhhh...hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhh........eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...........eeeee.....eeee...eeee...eeee...hhhh.eeeee...........eeeeeee.hhhh..eeeeeeee..eeeeee....eeeee.....ee...hhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9f A 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489   ||  507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787      |799       809       819       829       839       849       859       869       879       889       899       909       919   
                                                                                                                                                                                                                                                                                       493|                                                                                                                                                                                                                                                                                                 794|                                                                                                                             
                                                                                                                                                                                                                                                                                        502                                                                                                                                                                                                                                                                                                  797                                                                                                                             


Chain B from PDB  Type:RNA  Length:24
                                                        
                 5f9f B   1 GAAUAUAAUAGUGAUAUUAUAUUC  24
                                    10        20    


Chain C from PDB  Type:PROTEIN  Length:668
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhhh.....eeeehhhhh...hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhh......eeeeee......hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh....eee............hhhhhhhhhhhh.......eeee..............eeeee....hhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.........eeeee.....eeee...eeee...eeee...hhhh.eeeee.........eeeeeeeee.hhhh..eeeeeeee..eeeeee....eeeee.....ee...hhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9f C 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDEFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490 ||    510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790   ||  804       814       824       834       844       854       864       874       884       894       904       914        
                                                                                                                                                                                                                                                                                     492|                                                                                                                                                                                                                                                                                                794|                                                                                                                           
                                                                                                                                                                                                                                                                                      503                                                                                                                                                                                                                                                                                                 799                                                                                                                           


Chain D from PDB  Type:RNA  Length:24
                                                        
                 5f9f D   1 GAAUAUAAUAGUGAUAUUAUAUUC  24
                                    10        20    


Chain E from PDB  Type:PROTEIN  Length:672
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhh......eeeehhhhh...hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhhh.......eeee..............eeeee....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...........eeeee.....eeee...eeee...eeee...hhhh.eeeee...........eeeeeee.hhhh..eeeeeeee..eeeeee....eeeee.....ee...hhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5f9f E 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491||     510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920  
                                                                                                                                                                                                                                                                                    492|                                                                                                                                                                                                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                     502                                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain F from PDB  Type:RNA  Length:24
                                                        
                 5f9f F   1 GAAUAUAAUAGUGAUAUUAUAUUC  24
                                    10        20    


Chain G from PDB  Type:PROTEIN  Length:669
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhhhhh..eeeehhhhh...hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh....eee............hhhhhhhhhhh........eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.......eeeee.....eeee...eeee...eeee...hhhh.eeeee.....ee..eeeeeeeee.hhhh..eeeeeeee..eeeeee....eeeee.....eee..hhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9f G 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 ||    509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789    || 803       813       823       833       843       853       863       873       883       893       903       913         
                                                                                                                                                                                                                                                                                     491|                                                                                                                                                                                                                                                                                                 794|                                                                                                                           
                                                                                                                                                                                                                                                                                      502                                                                                                                                                                                                                                                                                                  799                                                                                                                           


Chain H from PDB  Type:RNA  Length:24
                                                        
                 5f9f H   1 GAAUAUAAUAGUGAUAUUAUAUUC  24
                                    10        20    


Chain I from PDB  Type:PROTEIN  Length:674
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhh......eeeehhhhh...hhhhhhhh..eeeehhhhhhhhhhh....hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhh........eeee..............eeeee....hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....eeee...eeee...eeee...hhhh.eeeee...........eeeeeee.......eeeeeeee..eeeeee....eeeee.....ee................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f9f I 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
                                   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489    || 506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       798       808       818       828       838       848       858       868       878       888       898       908       918    
                                                                                                                                                                                                                                                                                        494|                                                                                                                                                                                                                                                                                                  795|                                                                                                                            
                                                                                                                                                                                                                                                                                         502                                                                                                                                                                                                                                                                                                   798                                                                                                                            


Chain J from PDB  Type:RNA  Length:24
                                                        
                 5f9f J   1 GAAUAUAAUAGUGAUAUUAUAUUC  24
                                    10        20    


Chain K from PDB  Type:PROTEIN  Length:672
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhhh.....eeeehhhhh...hhhhhhhh..eeeehhhhhhhhhhhh...hhhhh.eeeee.hhhh...hhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhhhhhhh...eee....hhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhh........eeee..............eeeee....hhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....eeee...eeee...eeee.hhhhhh.eeeee...........eeeeeee.......eeeeeeee..eeeeee....eeeee.....eee..hhhhh....ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5f9f K 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM 923
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491 ||    509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789      |801       811       821       831       841       851       861       871       881       891       901       911       921  
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                                                                                                                                                                                                                                                                                      502                                                                                                                                                                                                                                                                                                    799                                                                                                                            


Chain L from PDB  Type:RNA  Length:24
                                                        
                 5f9f L   1 GAAUAUAAUAGUGAUAUUAUAUUC  24
                                    10        20
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DDX58_HUMAN | O95786: 2lwd 2lwe 2qfb 2qfd 2rmj 2ykg 3lrn 3lrr 3ncu 3og8 3zd6 3zd7 4ay2 4bpb 4nqk 4on9 4p4h 5e3h 5f98 5f9h

(-) Related Entries Specified in the PDB File

5f98 5f9h