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(-) Description

Title :  CRYSTAL STRUCTURE OF A CRENOMYTILUS GRAYANUS LECTIN IN COMPLEX WITH GB3 ALLYL
 
Authors :  J. -H. Liao, K. -F. Huang, I. -F. Tu, I. -M. Lee, S. -H. Wu
Date :  09 Dec 15  (Deposition) - 06 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lectin, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -H. Liao, C. -T. Chien, H. -Y. Wu, K. -F. Huang, I. Wang, M. -R. Ho, I. -F. Tu, I. -M. Lee, W. Li, Y. -L. Shih, C. -Y. Wu, P. A. Lukyanov, S. D. Hsu, S. -H. Wu
A Multivalent Marine Lectin From Crenomytilus Grayanus Possesses Anti-Cancer Activity Through Recognizing Globotriose Gb3
J. Am. Chem. Soc. V. 138 4787 2016
PubMed-ID: 27010847  |  Reference-DOI: 10.1021/JACS.6B00111

(-) Compounds

Molecule 1 - GALNAC/GAL-SPECIFIC LECTIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CRENOMYTILUS GRAYANUS
    Organism Taxid: 151218

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric/Biological Unit (5, 17)
No.NameCountTypeFull Name
15VQ3Ligand/Ion2-PROPEN-1-OL
2BGC3Ligand/IonBETA-D-GLUCOSE
3GAL5Ligand/IonBETA-D-GALACTOSE
4GLA5Ligand/IonALPHA D-GALACTOSE
5LMR1Ligand/Ion(2S)-2-HYDROXYBUTANEDIOIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:75 , HIS A:108 , PRO A:109 , GLY A:111 , GLY A:112 , VAL A:123 , HIS A:125 , ASP A:127 , HIS A:129 , HOH A:301 , HOH A:380binding site for residue LMR A 201
2AC2SOFTWAREHIS A:16 , PRO A:17 , TYR A:18 , GLY A:19 , GLY A:20 , ASP A:35 , HIS A:37 , ASN A:119 , GLU B:38 , TYR B:41 , HOH B:368 , HOH B:458 , HOH B:476 , HOH B:484 , HOH B:506binding site for Poly-Saccharide residues GLA A 202 through 5VQ A 205
3AC3SOFTWAREASN A:27 , HIS A:64 , TYR A:66 , GLY A:67 , GLY A:68 , ASP A:83 , HIS A:85 , ASN A:119 , GLA A:202 , HOH A:350 , HOH A:367 , GLU B:38 , TYR B:41 , ASN B:71 , LYS B:105 , HOH B:368 , HOH B:452 , HOH B:471 , HOH B:476 , HOH B:484 , HOH B:506binding site for Poly-Saccharide residues GLA A 206 through GAL A 207
4AC4SOFTWAREASN A:23 , HIS B:16 , PRO B:17 , TYR B:18 , GLY B:19 , GLY B:20 , ASP B:35 , HIS B:37 , ASN B:119 , HOH B:323 , HOH B:326 , HOH B:342 , HOH B:374 , HOH B:383binding site for Poly-Saccharide residues GLA B 201 through 5VQ B 204
5AC5SOFTWAREASN A:23 , ASN B:27 , HIS B:64 , PRO B:65 , TYR B:66 , GLY B:67 , GLY B:68 , ASP B:83 , HIS B:85 , ASN B:119 , GLA B:201 , HOH B:318 , HOH B:326 , HOH B:342 , HOH B:352 , HOH B:374 , HOH B:383 , HOH B:393 , HOH B:421 , HOH B:450binding site for Poly-Saccharide residues GLA B 205 through 5VQ B 208
6AC6SOFTWAREASN B:27 , GLU B:75 , HIS B:108 , PRO B:109 , LYS B:110 , GLY B:111 , GLY B:112 , ASP B:127 , HIS B:129 , GLA B:205 , HOH B:309 , HOH B:318 , HOH B:321 , HOH B:352 , HOH B:421 , HOH B:433 , HOH B:450binding site for Poly-Saccharide residues GLA B 209 through GAL B 210

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F90)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met A:1 -Thr A:2

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F90)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F90)

(-) Exons   (0, 0)

(no "Exon" information available for 5F90)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee.....eeee..........eeeeee...hhhh.eeeeeee..eeeeee.....eeee............eeee...hhhh.eeee....eeee....eeee..........eeeeee...hhhh.eeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5f90 A   1 MTTFLIKHKASGKFLHPYGGSSNPANNTKLVLHSDIHERMYFQFDVVDERWGYIKHVASGKIVHPYGGQANPPNETNMVLHQDRHDRALFAMDFFNDNIMHKGGKYIHPKGGSPNPPNNTETVIHGDKHAAMEFIFVSPKNKDKRVLVYA 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150


Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeee..........eeeeee...hhhh.eeeeeee..eeeeee.....eeee............eeee...hhhh.eeee....eeee....eeee..........eeeeee...hhhh.eeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f90 B   2 TTFLIKHKASGKFLHPYGGSSNPANNTKLVLHSDIHERMYFQFDVVDERWGYIKHVASGKIVHPYGGQANPPNETNMVLHQDRHDRALFAMDFFNDNIMHKGGKYIHPKGGSPNPPNNTETVIHGDKHAAMEFIFVSPKNKDKRVLVYA 150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F90)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F90)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F90)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        H2FH31_9BIVA | H2FH31: 5duy 5f8s 5f8w 5f8y

(-) Related Entries Specified in the PDB File

5f8s 5f8w 5f8y