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(-) Description

Title :  THE CRYSTAL STRUCTURE OF MLL3 SET DOMAIN
 
Authors :  Y. Li, M. Lei, Y. Chen
Date :  04 Dec 15  (Deposition) - 24 Feb 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Histone Methylation, Histone Methyltransferase, Set Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Li, J. Han, Y. Zhang, F. Cao, Z. Liu, S. Li, J. Wu, C. Hu, Y. Wang, J. Shuai, J. Chen, L. Cao, D. Li, P. Shi, C. Tian, J. Zhang, Y. Dou, G. Li, Y. Chen, M. Lei
Structural Basis For Activity Regulation Of Mll Family Methyltransferases.
Nature V. 530 447 2016
PubMed-ID: 26886794  |  Reference-DOI: 10.1038/NATURE16952

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE 2C
    Chains: A
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B-SUMO
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: MLL3 SET DOMAIN (UNP RESIDUES 4757-4910)
    Gene: KMT2C, HALR, KIAA1506, MLL3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LYSINE N-METHYLTRANSFERASE 2C,HOMOLOGOUS TO ALR PROTEIN, MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA PROTEIN 3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
2ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:4851 , CYS A:4899 , CYS A:4901 , CYS A:4906binding site for residue ZN A 5001
2AC2SOFTWAREILE A:4780 , GLN A:4781 , GLY A:4782 , LEU A:4783 , ARG A:4822 , TYR A:4825 , ARG A:4845 , TYR A:4846 , ASN A:4848 , HIS A:4849 , TYR A:4886 , PRO A:4898 , CYS A:4899 , HIS A:4900 , MET A:4910 , HOH A:5118binding site for residue SAH A 5002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F59)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F59)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F59)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F59)

(-) Exons   (0, 0)

(no "Exon" information available for 5F59)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...eeeee.....eeeee........eeee...eeeehhhhhhhhhhhhh......eee....eeee.....hhhhhhee.....eeeeeeee..eeeeeeee..........ee......ee..........ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5f59 A 4757 SKSSQYRKMKTEWKSNVYLARSRIQGLGLYAARDIEKHTMVIEYIGTIIRNEVANRKEKLYESQNRGVYMFRMDNDHVIDATLTGGPARYINHSCAPNCVAEVVTFERGHKIIISSSRRIQKGEELCYDYKFDKIPCHCGAVNCRKWM 4910
                                  4766      4776      4786      4796      4806      4816      4826      4836      4846      4856      4866      4876      4886  ||  4902        
                                                                                                                                                             4889|              
                                                                                                                                                              4896
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F59)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F59)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F59)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KMT2C_HUMAN | Q8NEZ4: 2ysm 2yuk 3uvl 4ery 5f6k

(-) Related Entries Specified in the PDB File

5f5e 5f6k 5f6l