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(-) Description

Title :  CRYSTAL STRUCTURE OF HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE COMPLEXED WITH GMP FROM LEGIONELLA PNEUMOPHILA
 
Authors :  N. Zhang, X. Gong, M. Lu, X. Chen, X. Qin, H. Ge
Date :  17 Nov 15  (Deposition) - 30 Mar 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hypoxanthine-Guanine Phosphoribosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Zhang, X. Gong, M. Lu, X. Chen, X. Qin, H. Ge
Crystal Structures Of Apo And Gmp Bound Hypoxanthine-Guanin Phosphoribosyltransferase From Legionella Pneumophila And The Implications In Gouty Arthritis
J. Struct. Biol. V. 194 311 2016
PubMed-ID: 26968365  |  Reference-DOI: 10.1016/J.JSB.2016.03.007

(-) Compounds

Molecule 1 - PURINE/PYRIMIDINE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LP12_1457
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA ATCC 43290
    Organism Taxid: 933093
    Strain: ATCC 43290
    Synonym: HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
15GP2Ligand/IonGUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:76 , ASP A:105 , ASP A:106 , ILE A:107 , ASP A:109 , GLY A:110 , GLY A:111 , ILE A:112 , THR A:113 , LYS A:137 , HIS A:159 , TYR A:160 , ILE A:161 , ASP A:167binding site for residue 5GP A 600
2AC2SOFTWAREARG B:76 , ASP B:105 , ASP B:106 , ILE B:107 , ASP B:109 , GLY B:110 , GLY B:111 , ILE B:112 , THR B:113 , LYS B:137 , ILE B:161 , ASP B:167binding site for residue 5GP B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ESX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:49 -Val A:50
2Met B:49 -Val B:50

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ESX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ESX)

(-) Exons   (0, 0)

(no "Exon" information available for 5ESX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhh......eeeeeeeee.........eeeee..hhhhh..eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeeee.............eeeeee....ee..............eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5esx A   0 HMTIPDKIKAVYEKSTCLYTSNEVEAALDRMAIKIHETLQDKNPVIICVMVGGLVPLGNLLHRLDFPLEVDYVHATRYRGDLTGGDILWKVRPSSNLAGRTVLVVDDILDGGITLAAIINEIKAMGAAEVYSAVLVDKYRKRVPNGLQKADFVGLQVEDHYIFGYGMDYHEYLRNAPGIFIVHPDHE 186
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       


Chain B from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhh......eeeeeeee......hhhhheeee..hhhhh..eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.hhhh.........eeeee.....ee..............eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5esx B   0 HMTIPDKIKAVYEKSTCLYTSNEVEAALDRMAIKIHETLQDKNPVIICVMVGGLVPLGNLLHRLDFPLEVDYVHATRYRGDLTGGDILWKVRPSSNLAGRTVLVVDDILDGGITLAAIINEIKAMGAAEVYSAVLVDKYRKRVPNGLQKADFVGLQVEDHYIFGYGMDYHEYLRNAPGIFIVHPDH 185
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ESX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ESX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ESX)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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5esw