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(-) Description

Title :  CRYSTAL STRUCTURE OF AOL(868)
 
Authors :  R. Kato, M. Kiso, H. Ishida, H. Ando, T. Suzuki, S. Shimabukuro, H. Makyi
Date :  10 Nov 15  (Deposition) - 29 Jun 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Seleno-Fucoses, Phaing, Lectin, Aspergillus Oryzae, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Makyio, J. Shimabukuro, T. Suzuki, A. Imamura, H. Ishida, M. Kiso, H. Ando, R. Kato
Six Independent Fucose-Binding Sites In The Crystal Structure Of Aspergillus Oryzae Lectin
Biochem. Biophys. Res. Commun. V. 477 477 2016
PubMed-ID: 27318092  |  Reference-DOI: 10.1016/J.BBRC.2016.06.069

(-) Compounds

Molecule 1 - PREDICTED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Taxid: 5062
    Gene: AO090001000189
    Organism Common: YELLOW KOJI MOLD
    Organism Scientific: ASPERGILLUS ORYZAE RIB40
    Organism Taxid: 510516
    Strain: RIB 40
    Synonym: LECTIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1TFU6Ligand/Ion(2S,3S,4R,5S,6R)-2-METHYL-6-METHYLSELANYL-OXANE-3,4,5-TRIOL
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1TFU12Ligand/Ion(2S,3S,4R,5S,6R)-2-METHYL-6-METHYLSELANYL-OXANE-3,4,5-TRIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:40 , TRP A:44 , ARG A:277 , GLU A:291 , HOH A:665binding site for residue TFU A 401
2AC2SOFTWAREARG A:25 , GLU A:37 , LEU A:69 , TYR A:88 , TRP A:94binding site for residue TFU A 402
3AC3SOFTWAREARG A:73 , GLU A:85 , TYR A:95 , ALA A:98 , LEU A:125 , TRP A:141 , TRP A:146 , TYR A:171 , ASP A:193 , PRO A:194 , TYR A:199 , HOH A:696binding site for residue TFU A 403
4AC4SOFTWAREARG A:126 , GLU A:138 , MET A:140 , THR A:150 , TYR A:192 , TRP A:198 , HOH A:562binding site for residue TFU A 404
5AC5SOFTWAREGLY A:143 , ARG A:177 , GLN A:189 , GLU A:201 , ILE A:227 , MET A:229 , TRP A:245 , TYR A:251 , HOH A:513 , HOH A:548binding site for residue TFU A 405
6AC6SOFTWAREARG A:230 , GLN A:242 , ARG A:255 , PRO A:274 , LEU A:276 , TRP A:294 , HOH A:510binding site for residue TFU A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EO8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:273 -Pro A:274
2Pro A:308 -Pro A:309

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EO8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EO8)

(-) Exons   (0, 0)

(no "Exon" information available for 5EO8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.....eeeeee..eeeeeee....eeeeeee...eee.....eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeeee...eeeeeeeeee.......eeeee...eeeeee.........eeeeee...eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eo8 A   1 MSTPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EO8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EO8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EO8)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q2UNX8_ASPOR | Q2UNX8: 5eo7 5h47

(-) Related Entries Specified in the PDB File

5eo7