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(-) Description

Title :  CRYSTAL STRUCTURE OF AOL
 
Authors :  R. Kato, M. Kiso, H. Ishida, H. Ando, T. Suzuki, S. Shimabukuro, H. Makyi
Date :  10 Nov 15  (Deposition) - 29 Jun 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Seleno-Fucoses, Phaing, Lectin, Aspergillus Oryzae, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Makyio, J. Shimabukuro, T. Suzuki, A. Imamura, H. Ishida, M. Kiso, H. Ando, R. Kato
Six Independent Fucose-Binding Sites In The Crystal Structure Of Aspergillus Oryzae Lectin
Biochem. Biophys. Res. Commun. V. 477 477 2016
PubMed-ID: 27318092  |  Reference-DOI: 10.1016/J.BBRC.2016.06.069

(-) Compounds

Molecule 1 - PREDICTED PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Taxid: 5062
    Gene: AO090001000189
    Organism Common: YELLOW KOJI MOLD
    Organism Scientific: ASPERGILLUS ORYZAE RIB40
    Organism Taxid: 510516
    Strain: RIB 40
    Synonym: LECTIN

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric Unit (2, 19)
No.NameCountTypeFull Name
1SFU15Ligand/IonMETHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1SFU10Ligand/IonMETHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE
2SO46Ligand/IonSULFATE ION
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1SFU10Ligand/IonMETHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE
2SO41Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:25 , GLU A:37 , ILE A:72 , TYR A:88 , TRP A:94binding site for residue SFU A 401
02AC2SOFTWAREARG A:73 , GLU A:85 , TYR A:95 , GLY A:97 , ALA A:98 , LEU A:125 , TRP A:141 , TRP A:146binding site for residue SFU A 402
03AC3SOFTWAREARG A:126 , GLU A:138 , MET A:140 , THR A:150 , TYR A:192 , TRP A:198binding site for residue SFU A 403
04AC4SOFTWAREARG A:230 , GLN A:242 , LEU A:276 , TRP A:294binding site for residue SFU A 404
05AC5SOFTWARETYR A:40 , TRP A:44 , ARG A:277 , GLU A:291 , ASN C:121binding site for residue SFU A 405
06AC6SOFTWAREGLY A:43 , TRP A:44 , ARG A:304 , HOH A:507binding site for residue SO4 A 406
07AC7SOFTWARELYS A:186 , THR A:204 , HOH A:516 , LYS B:200binding site for residue SO4 A 407
08AC8SOFTWARETRP A:294 , GLY A:299 , SER A:300 , HOH A:514binding site for residue SO4 A 408
09AC9SOFTWAREARG B:25 , GLU B:37 , LEU B:69 , TYR B:88 , TRP B:94binding site for residue SFU B 401
10AD1SOFTWAREARG B:73 , GLU B:85 , TYR B:95 , GLY B:97 , ALA B:98 , LEU B:123 , LEU B:125 , TRP B:141 , TRP B:146binding site for residue SFU B 402
11AD2SOFTWAREARG B:126 , GLU B:138 , MET B:140 , THR B:150 , ILE B:176 , TYR B:192 , TRP B:198binding site for residue SFU B 403
12AD3SOFTWAREARG B:230 , GLN B:242 , ARG B:255 , LEU B:276 , TRP B:294binding site for residue SFU B 404
13AD4SOFTWARELEU B:24 , TYR B:40 , TRP B:44 , ARG B:277 , GLU B:291binding site for residue SFU B 405
14AD5SOFTWAREARG C:25 , GLU C:37 , LEU C:69 , ILE C:72 , TYR C:88 , TRP C:94binding site for residue SFU C 401
15AD6SOFTWAREARG C:73 , GLU C:85 , TYR C:95 , GLY C:97 , ALA C:98 , LEU C:125 , TRP C:146 , HOH C:593binding site for residue SFU C 402
16AD7SOFTWAREARG C:126 , GLU C:138 , MET C:140 , THR C:150 , ILE C:176 , TYR C:192 , TRP C:198binding site for residue SFU C 403
17AD8SOFTWAREARG C:230 , GLN C:242 , LEU C:276binding site for residue SFU C 404
18AD9SOFTWARELEU C:24 , TYR C:40 , TRP C:44 , ARG C:277 , GLU C:291 , HOH C:507binding site for residue SFU C 405
19AE1SOFTWAREGLY C:43 , TRP C:44 , ARG C:304binding site for residue SO4 C 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EO7)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:273 -Pro A:274
2Pro A:308 -Pro A:309
3Gly B:273 -Pro B:274
4Pro B:308 -Pro B:309
5Gly C:273 -Pro C:274
6Pro C:308 -Pro C:309

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EO7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EO7)

(-) Exons   (0, 0)

(no "Exon" information available for 5EO7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......eeeeee..eeeeeee....eeeeeee...eee.hhh.eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeee.....eeeeeeeee.......eeeee...eeeeee.........eeeeee...eeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eo7 A   2 STPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain B from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....eeeeee..eeeeeee....eeeeeee...eee.....eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee.....eeeeeeee.......eeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeee.....eeeeeeeee.......eeeee...eeeeee.........eeeeee...eeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eo7 B   2 STPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain C from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....eeeeee..eeeeeee....eeeeeee...eee.....eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeee.....eeeeeeeee.......eeeee...eeeeee.........eeeeee...eeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eo7 C   2 STPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EO7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EO7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EO7)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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        Q2UNX8_ASPOR | Q2UNX8: 5eo8 5h47

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5eo8