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(-) Description

Title :  SACCHAROMYCES CEREVISIAE CYP51 COMPLEXED WITH THE PLANT PATHOGEN INHIBITOR DIFENOCONAZOLE
 
Authors :  J. D. A. Tyndall, M. Sabherwal, M. V. Keniya, R. K. Wilson, M. V. Woods, B.
Date :  16 Oct 15  (Deposition) - 10 Feb 16  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A
Keywords :  Cyp51, Difenoconazole, Oxidoreductase-Oxidoreductase Inhibitor Complex, Racemic Mixture, Oxidoreductase-Oxidoreducatse Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Tyndall, M. Sabherwal, A. A. Sagatova, M. V. Keniya, J. Negroni, R. K. Wilson, M. A. Woods, K. Tietjen, B. C. Monk
Structural And Functional Elucidation Of Yeast Lanosterol 1 Alpha-Demethylase In Complex With Agrochemical Antifungals.
Plos One V. 11 67485 2016
PubMed-ID: 27907120  |  Reference-DOI: 10.1371/JOURNAL.PONE.0167485
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LANOSTEROL 14-ALPHA DEMETHYLASE
    Chains: A
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Taxid: 4932
    Gene: ERG11, SCY_2394
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 307796
    Strain: YJM789

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
15LW1Ligand/Ion1-[[(2~{S},4~{S})-2-[2-CHLORANYL-4-(4-CHLORANYLPHENOXY)PHENYL]-4-METHYL-1,3-DIOXOLAN-2-YL]METHYL]-1,2,4-TRIAZOLE
25LX1Ligand/Ion1-[[(2~{R},4~{S})-2-[2-CHLORANYL-4-(4-CHLORANYLPHENOXY)PHENYL]-4-METHYL-1,3-DIOXOLAN-2-YL]METHYL]-1,2,4-TRIAZOLE
35LY1Ligand/Ion1-[[(2~{R},4~{R})-2-[2-CHLORANYL-4-(4-CHLORANYLPHENOXY)PHENYL]-4-METHYL-1,3-DIOXOLAN-2-YL]METHYL]-1,2,4-TRIAZOLE
45LZ1Ligand/Ion1-[[(2~{S},4~{R})-2-[2-CHLORANYL-4-(4-CHLORANYLPHENOXY)PHENYL]-4-METHYL-1,3-DIOXOLAN-2-YL]METHYL]-1,2,4-TRIAZOLE
5HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:113 , TYR A:126 , TYR A:140 , LEU A:147 , LYS A:151 , GLY A:315 , THR A:318 , LEU A:374 , PRO A:379 , LEU A:383 , ARG A:385 , PRO A:462 , PHE A:463 , HIS A:468 , CYS A:470 , GLY A:472 , 5LZ A:602 , 5LW A:603 , 5LY A:605binding site for residue HEM A 601
2AC2SOFTWARETYR A:126 , PHE A:134 , ILE A:139 , GLN A:150 , LYS A:151 , PHE A:236 , LEU A:307 , GLY A:310 , VAL A:311 , GLY A:314 , THR A:318 , LEU A:380 , HEM A:601 , 5LW A:603 , 5LY A:605binding site for residue 5LZ A 602
3AC3SOFTWARETYR A:126 , PHE A:134 , ILE A:139 , GLN A:150 , LYS A:151 , PHE A:236 , LEU A:307 , GLY A:310 , VAL A:311 , GLY A:314 , THR A:318 , LEU A:380 , HEM A:601 , 5LZ A:602 , 5LY A:605binding site for residue 5LW A 603
4AC4SOFTWARETYR A:126 , PHE A:134 , ILE A:139 , GLN A:150 , LYS A:151 , PHE A:236 , LEU A:307 , GLY A:310 , VAL A:311 , GLY A:314 , HEM A:601 , 5LZ A:602 , 5LW A:603binding site for residue 5LY A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EAH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:515 -Pro A:516

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EAH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EAH)

(-) Exons   (0, 0)

(no "Exon" information available for 5EAH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:529
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.....eehhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.........eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.....eeeee...ee......ee....eeeehhhhhh............hhhhhh...........eee....eee..................hhhhhhhhhhhhhhhhhhheeee.........eehhhh..ee....eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eah A   6 SIVGEALEYVNIGLSHFLALPLAQRISLIIIIPFIYNIVWQLLYSLRKDRPPLVFYWIPWVGSAVVYGMKPYEFFEECQKKYGDIFSFVLLGRVMTVYLGPKGHEFVFNAKLADVSAEAAYAHLTTPVFGKGVIYDCPNSRLMEQKKFVKGALTKEAFKSYVPLIAEEVYKYFRDSKNFRLNERTTGTIDVMVTQPEMTIFTASRSLLGKEMRAKLDTDFAYLYSDLDKGFTPINFVFPNLPLEHYRKRDHAQKAISGTYMSLIKERRKNNDIQDRDLIDSLMKNSTYKDGVKMTDQEIANLLIGVLMGGQHTSAATSAWILLHLAERPDVQQELYEEQMRVLDGGKKELTYDLLQEMPLLNQTIKETLRMHHPLHSLFRKVMKDMHVPNTSYVIPAGYHVLVSPGYTHLRDEYFPNAHQFNIHRWNNDSASSYSVGEEVDYGFGAISKGVSSPYLPFGGGRHRCIGEHFAYCQLGVLMSIFIRTLKWHYPEGKTVPPPDFTSMVTLPTGPAKIIWEKRNPEQKIGGRH 534
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EAH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EAH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EAH)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:515 - Pro A:516   [ RasMol ]  
 

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  5eah
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A6ZSR0_YEAS7 | A6ZSR0: 4k0f 4wmz 4zdy 4zdz 4ze0 4ze1 4ze2 4ze3 5eab 5eac 5ead 5eae 5eaf 5eag 5ese 5esf 5esg 5esh 5esi 5esj 5esk 5esl 5esm 5esn 5hs1 5ul0

(-) Related Entries Specified in the PDB File

4wmz 4WMZ IS A COMPLEX OF THE SAME PROTEIN COMPLEXED WITH FLUCONAZOLE
5eab
5eac
5ead
5eae
5eaf
5eag