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5E4T
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (186 KB)
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(1)
Title
:
ACETYCHOLINESTERASE METHYLENE BLUE WITH PEG
Authors
:
O. Dym
Date
:
07 Oct 15 (Deposition) - 30 Mar 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.43
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Dym, W. Song, C. Felder, E. Roth, V. Shnyrov, Y. Ashani, Y. Xu, R. P. Joosten, L. Weiner, J. L. Sussman, I. Silman
The Impact Of Crystallization Conditions On Structure-Based Drug Design: A Case Study On The Methylene Blue/Acetylcholinesterase Complex.
Protein Sci. V. 25 1096 2016
[
close entry info
]
Hetero Components
(8, 38)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ALPHA-L-FUCOSE (FUCa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN... (MBTa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
7d: DI(HYDROXYETHYL)ETHER (PEGd)
7e: DI(HYDROXYETHYL)ETHER (PEGe)
7f: DI(HYDROXYETHYL)ETHER (PEGf)
7g: DI(HYDROXYETHYL)ETHER (PEGg)
7h: DI(HYDROXYETHYL)ETHER (PEGh)
7i: DI(HYDROXYETHYL)ETHER (PEGi)
7j: DI(HYDROXYETHYL)ETHER (PEGj)
7k: DI(HYDROXYETHYL)ETHER (PEGk)
7l: DI(HYDROXYETHYL)ETHER (PEGl)
8a: TRIETHYLENE GLYCOL (PGEa)
8b: TRIETHYLENE GLYCOL (PGEb)
8c: TRIETHYLENE GLYCOL (PGEc)
8d: TRIETHYLENE GLYCOL (PGEd)
8e: TRIETHYLENE GLYCOL (PGEe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
5
MBT
1
Ligand/Ion
3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM
6
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
PEG
12
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PGE
5
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:70 , TYR A:121 , GLN A:185 , TRP A:279 , TYR A:334 , PEG A:614 , PGE A:625 , PGE A:629
binding site for residue MBT A 612
02
AC2
SOFTWARE
ASN A:230 , SER A:235 , HOH A:769
binding site for residue PEG A 613
03
AC3
SOFTWARE
GLN A:74 , HIS A:181 , LYS A:192 , TYR A:334 , GLY A:335 , MBT A:612
binding site for residue PEG A 614
04
AC4
SOFTWARE
ASP A:297
binding site for residue PEG A 615
05
AC5
SOFTWARE
ARG A:105 , PRO A:106 , GLN A:185 , PHE A:186 , ASN A:251 , PEG A:621
binding site for residue PEG A 616
06
AC6
SOFTWARE
HIS A:513 , HOH A:749
binding site for residue PEG A 617
07
AC7
SOFTWARE
LYS A:325 , ASP A:326 , ASP A:389 , ASP A:393 , GLU A:434 , EDO A:630 , HOH A:762
binding site for residue PEG A 618
08
AC8
SOFTWARE
TYR A:63 , TRP A:100 , ASN A:131
binding site for residue PEG A 619
09
AC9
SOFTWARE
LYS A:14
binding site for residue PEG A 620
10
AD1
SOFTWARE
GLU A:247 , ARG A:250 , PEG A:616
binding site for residue PEG A 621
11
AD2
SOFTWARE
LYS A:346
binding site for residue PEG A 622
12
AD3
SOFTWARE
LEU A:494
binding site for residue PEG A 623
13
AD4
SOFTWARE
GLY A:117 , GLY A:118 , TYR A:121 , GLU A:199 , MBT A:612 , HOH A:701 , HOH A:736
binding site for residue PGE A 625
14
AD5
SOFTWARE
VAL A:57 , TRP A:58 , ASN A:59 , NAG A:601
binding site for residue PGE A 626
15
AD6
SOFTWARE
GLU A:499 , LYS A:501
binding site for residue PGE A 627
16
AD7
SOFTWARE
ASN A:9 , ARG A:243 , GLU A:247 , VAL A:281 , LEU A:282
binding site for residue PGE A 628
17
AD8
SOFTWARE
LYS A:11 , ASP A:182 , GLN A:185 , TRP A:279 , ASP A:285 , SER A:286 , TYR A:334 , GLY A:335 , MBT A:612 , HOH A:810
binding site for residue PGE A 629
18
AD9
SOFTWARE
GLU A:344 , ILE A:385 , ARG A:388 , PEG A:618 , HOH A:790
binding site for residue EDO A 630
19
AE1
SOFTWARE
PRO A:232 , ARG A:289 , PRO A:361 , HIS A:362
binding site for residue EDO A 631
20
AE2
SOFTWARE
LYS A:11 , TRP A:54
binding site for residue EDO A 632
21
AE3
SOFTWARE
TRP A:432
binding site for residue EDO A 633
22
AE4
SOFTWARE
THR A:109 , GLU A:139 , GLU A:140 , LYS A:478
binding site for residue EDO A 634
23
AE5
SOFTWARE
ARG A:44 , GLU A:268 , LYS A:269
binding site for residue EDO A 636
24
AE6
SOFTWARE
SER A:55 , VAL A:57
binding site for residue EDO A 637
25
AE7
SOFTWARE
HIS A:406 , ASN A:525 , HOH A:763
binding site for residue EDO A 638
26
AE8
SOFTWARE
ASN A:59 , SER A:61 , PGE A:626
binding site for Poly-Saccharide residues NAG A 601 through FUC A 602 bound to ASN A 59
27
AE9
SOFTWARE
ASN A:255 , GLU A:261 , ASN A:416 , MAN A:611
binding site for Poly-Saccharide residues NAG A 603 through MAN A 606 bound to ASN A 416
28
AF1
SOFTWARE
LYS A:413 , PHE A:414 , GLY A:415 , LEU A:456 , ASN A:457 , NAG A:603 , NAG A:604
binding site for Poly-Saccharide residues NAG A 607 through MAN A 611 bound to ASN A 457
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 2W9I: 1,1)
Info
All SCOP Domains
1a: SCOP_d2w9ia_ ()
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Sorry, no Info available
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CATH Domains
(0, 0 ; only for superseded entry 2W9I: 1,1)
Info
all CATH domains
1a: CATH_2w9iA00 ()
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (193 KB)
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