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Title :   ESTROGEN RECEPTOR ALPHA LIGAND BINDING DOMAIN Y537S MUTANT IN COMPLEX WITH STAPLED PEPTIDE SRC2-P3 AND ESTRADIOL

Authors :   T. E. Speltz, S. W. Fanning, C. G. Mayne, E. Tajkhorshid, G. L. Greene, T.

Date :   23 Sep 15 (Deposition) - 20 Jul 16 (Release) - 20 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.09

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Synthetic Peptide, Stapled Peptide, Estrogen Receptor Alpha, Somatic Mutation, Peptide Mimetic, Af-2 Binding, Hormone Receptor-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. E. Speltz, S. W. Fanning, C. G. Mayne, C. Fowler, E. Tajkhorshid, G. L. Greene, T. W. Moore
Stapled Peptides With Gamma-Methylated Hydrocarbon Chains For The Estrogen Receptor/Coactivator Interaction.
Angew. Chem. Int. Ed. Engl. V. 55 4252 2016
PubMed-ID: 26928945 | Reference-DOI: 10.1002/ANIE.201510557

Molecule 1 - ESTROGEN RECEPTOR
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ESR1, ESR, NR3A1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 1

Molecule 2 - ESTROGEN RECEPTOR
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ESR1, ESR, NR3A1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 1

Molecule 3 - STAPLED PEPTIDE SRC2-P3
	Chains	:	C, D
	Engineered	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 11)

No.	Name	Count	Type	Full Name
1	5GM	2	Mod. Amino Acid	(4S)-2,4-DIMETHYL-L-NORLEUCINE
2	ACE	2	Mod. Amino Acid	ACETYL GROUP
3	CL	1	Ligand/Ion	CHLORIDE ION
4	EST	2	Ligand/Ion	ESTRADIOL
5	MK8	2	Mod. Amino Acid	2-METHYL-L-NORLEUCINE
6	NH2	2	Mod. Amino Acid	AMINO GROUP

Biological Unit 1 (5, 5)

No.	Name	Count	Type	Full Name
1	5GM	1	Mod. Amino Acid	(4S)-2,4-DIMETHYL-L-NORLEUCINE
2	ACE	1	Mod. Amino Acid	ACETYL GROUP
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EST	1	Ligand/Ion	ESTRADIOL
5	MK8	1	Mod. Amino Acid	2-METHYL-L-NORLEUCINE
6	NH2	1	Mod. Amino Acid	AMINO GROUP

Biological Unit 2 (5, 5)

No.	Name	Count	Type	Full Name
1	5GM	1	Mod. Amino Acid	(4S)-2,4-DIMETHYL-L-NORLEUCINE
2	ACE	1	Mod. Amino Acid	ACETYL GROUP
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EST	1	Ligand/Ion	ESTRADIOL
5	MK8	1	Mod. Amino Acid	2-METHYL-L-NORLEUCINE
6	NH2	1	Mod. Amino Acid	AMINO GROUP

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:343 , LEU A:346 , GLU A:353 , ARG A:394 , HIS A:524 , LEU A:525	binding site for residue EST A 601
2	AC2	SOFTWARE	ARG A:352 , ARG B:352 , HOH B:1138	binding site for residue CL A 602
3	AC3	SOFTWARE	GLU B:353 , LEU B:387 , ARG B:394 , PHE B:404 , MET B:421 , HIS B:524 , HOH B:1114	binding site for residue EST B 1000
4	AC4	SOFTWARE	SER C:12	binding site for Ligand NH2 C 13 bound to SER C 12
5	AC5	SOFTWARE	ASP D:11 , SER D:12	binding site for Ligand NH2 D 13 bound to SER D 12
6	AC6	SOFTWARE	LYS D:3 , 5GM D:4	binding site for Di-peptide ACE D 1 and HIS D 2
7	AC7	SOFTWARE	VAL B:376 , GLU B:380 , LEU B:539 , HIS D:2 , LEU D:5 , HIS D:6 , ARG D:7 , MK8 D:8	binding site for Di-peptide LYS D 3 and 5GM D 4
8	AC8	SOFTWARE	ILE B:358 , LEU B:539 , MET B:543 , HIS D:2 , LYS D:3 , HIS D:6 , ARG D:7 , MK8 D:8 , LEU D:9	binding site for Di-peptide 5GM D 4 and LEU D 5

(no "SS Bond" information available for 5DX3)

(no "Cis Peptide Bond" information available for 5DX3)

(no "SAP(SNP)/Variant" information available for 5DX3)

(no "PROSITE Motif" information available for 5DX3)

(no "Exon" information available for 5DX3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeehhhhh....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dx3 A 307 ALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAH 547
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456    || 476       486       496       506       516       526       536       546 
                                                                                                                                                                                    461|                                                                           
                                                                                                                                                                                     472

Chain B from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeee.hhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dx3 B 308 LSLTADQMVSALLDAEPPILYSEFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKMVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGYTFKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 548
                                   317       327  ||   343       353       363       373       383       393       403       413       423       433       443       453   || |474       484       494       504       514       524       534       544    
                                                330|                                                                                                                     457| ||                                                                            
                                                 337                                                                                                                      459 ||                                                                            
                                                                                                                                                                            461|                                                                            
                                                                                                                                                                             472

Chain C from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 5dx3 C   1 xHKxLHRlLQDSx  13
                            |  |   |10  |
                            1-ACE  |    |
                               4-5GM    |
                                   8-MK8|
                                       13-NH2

Chain D from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 5dx3 D   1 xHKxLHRlLQDSx  13
                            |  |   |10  |
                            |  |   |    |
                            1-ACE  |    |
                               4-5GM    |
                                   8-MK8|
                                       13-NH2

Legend:		→ Mismatch	(orange background)
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		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DX3)

(no "CATH Domain" information available for 5DX3)

(no "Pfam Domain" information available for 5DX3)

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(no "Cis Peptide Bonds" information available for 5dx3)

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Description

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Ligands, Modified Residues, Ions (6, 11)

Sites (8, 8)

SS Bonds (0, 0)

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