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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LUCIFERASE COMPLEXED WITH SUBSTRATE ANALOGUE
 
Authors :  J. Su, Z. Li, Z. Yuan, L. Gu
Date :  23 Sep 15  (Deposition) - 28 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Luciferase, Complex, Substrate Analogue, Photinus Pyralis, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Su, Z. Li, Z. Yuan, L. Gu
Crystal Structure Of The Luciferase Complexed With Substrat Analogue
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LUCIFERIN 4-MONOOXYGENASE
    Chains: A
    EC Number: 1.13.12.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: COMMON EASTERN FIREFLY
    Organism Scientific: PHOTINUS PYRALIS
    Organism Taxid: 7054
    Synonym: LUCIFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15J41Ligand/Ion2-[6-(CYCLOBUTA-1,3-DIEN-1-YLAMINO)-1,3-BENZOTHIAZOL-2-YL]-1,3-THIAZOL-4-OL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:245 , GLY A:246 , PHE A:247 , SER A:314 , GLY A:315 , ARG A:337 , GLY A:339 , GLY A:341 , LEU A:342 , THR A:343 , SER A:347 , ALA A:348 , HOH A:729binding site for residue 5J4 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DWV)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:3 -Ala A:4
2Ser A:314 -Gly A:315
3Ala A:317 -Pro A:318

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DWV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DWV)

(-) Exons   (0, 0)

(no "Exon" information available for 5DWV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee...........hhhhhhhhhhhhhhh....eeeee.....eeehhhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhh..eeeee....hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh....eeee...........hhhhhhhh.....................eeeeee.....eeeeehhhhhhhhhhhhh...........eeee.....hhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh...eee.hhhhhhhhhhh.hhhhh......eeee.....hhhhhhhhhhhh.....eeeee.hhhh.eeee............ee....eeeee.............eeeeee......ee..hhhhhhhhh.....eeeeeeeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dwv A   3 DAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 437
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     ||206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436 
                                                                                                                                                                                                                             198|                                                                                                                                                                                                                                          
                                                                                                                                                                                                                              203
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DWV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DWV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DWV)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5dwv
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  LUCI_PHOPY | P08659
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  1.13.12.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LUCI_PHOPY | P08659: 1ba3 1lci 3iep 3ier 3ies 3rix 4e5d 4g36 4g37 5dv9 5kyt 5kyv

(-) Related Entries Specified in the PDB File

5dv9